Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10e06r
         (741 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    22   6.0  
AM292365-1|CAL23177.1|  313|Tribolium castaneum gustatory recept...    21   7.9  
AM292325-1|CAL23137.2|  309|Tribolium castaneum gustatory recept...    21   7.9  

>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 7/10 (70%), Positives = 9/10 (90%)
 Frame = +2

Query: 401 MKCNIPVFIA 430
           +KCNIP F+A
Sbjct: 142 LKCNIPSFVA 151


>AM292365-1|CAL23177.1|  313|Tribolium castaneum gustatory receptor
           candidate 44 protein.
          Length = 313

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +1

Query: 598 YHHVSYVFLSFFFNAL 645
           Y  V  VFL++FFN L
Sbjct: 76  YCSVLLVFLTYFFNIL 91


>AM292325-1|CAL23137.2|  309|Tribolium castaneum gustatory receptor
           candidate 4 protein.
          Length = 309

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +1

Query: 598 YHHVSYVFLSFFFNAL 645
           Y  V  VFL++FFN L
Sbjct: 72  YCSVLLVFLTYFFNIL 87


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 149,358
Number of Sequences: 336
Number of extensions: 3141
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19884055
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)