Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10e06r
         (741 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6B12.09 |trm10||tRNA m|Schizosaccharomyces pombe|chr 1|||Manual   143   2e-35
SPBC23G7.04c |nif1||SEL1 repear protein Nif1|Schizosaccharomyces...    29   0.70 
SPBC1773.09c |mug184||meiotically upregulated gene Mug184|Schizo...    28   1.2  
SPAC31G5.15 |||phosphatidylserine decarboxylase |Schizosaccharom...    27   2.1  
SPCC1322.12c |bub1||serine/threonine protein kinase Bub1|Schizos...    26   6.5  
SPAC31A2.09c |apm4||AP-2 adaptor complex subunit Apm4 |Schizosac...    25   8.6  

>SPAC6B12.09 |trm10||tRNA m|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 304

 Score =  143 bits (347), Expect = 2e-35
 Identities = 75/198 (37%), Positives = 118/198 (59%), Gaps = 5/198 (2%)
 Frame = -3

Query: 598 IIIDLSFGHLMIEKDRFKVIKQILRCYSINRRSEQPLHFHITSFGE--KSRNDMSRHNGY 425
           I++D +F  LM +K+   + +Q+ RC+S NR +  P+    T+FG   K+R D       
Sbjct: 97  IVLDCAFDDLMNDKEINSLCQQVTRCHSANRTALHPVELFATNFGGRLKTRQDFVLKGQQ 156

Query: 424 ENWD-IAFHEQPYLEVFP--KEKLVYLTSESENIIESFDDDTYYIIGGLVDHNQYKGVCH 254
            NW       + YLE F   KEKLVYL+++S+N I   D+D  YIIG +VD N+YK +C 
Sbjct: 157 NNWKRYNPTTKSYLEEFESQKEKLVYLSADSDNTITELDEDKIYIIGAIVDKNRYKNLCQ 216

Query: 253 NISVEQGIRHGRLPLDKYINMKTRKVLTIDHVFEIMLKISEGLTWQETLIRVLPVRKGAH 74
           N + EQGI+  +LP+D+YI +  RK+LT++ VFEI+    E   W++  + V+P RKG  
Sbjct: 217 NKASEQGIKTAKLPIDEYIKITDRKILTVNQVFEILSLWLEYRDWEKAFMEVIPKRKGIL 276

Query: 73  ICNASNSNLSLDSENAVN 20
           + +  + ++S D+ +  N
Sbjct: 277 LKSDESFDVSEDTRSQSN 294


>SPBC23G7.04c |nif1||SEL1 repear protein Nif1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 681

 Score = 29.1 bits (62), Expect = 0.70
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = -3

Query: 385 EVFPKEKLVYLTSESENIIESFDDDTYY 302
           +V P +  ++ +  S NI ESFDDD YY
Sbjct: 147 DVHPND--IFDSYNSNNIAESFDDDNYY 172


>SPBC1773.09c |mug184||meiotically upregulated gene
           Mug184|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 551

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 16/63 (25%), Positives = 26/63 (41%)
 Frame = -3

Query: 502 SEQPLHFHITSFGEKSRNDMSRHNGYENWDIAFHEQPYLEVFPKEKLVYLTSESENIIES 323
           S  P  F   S G KSR+D   +     W  +  E+P  ++  K    ++ S +    + 
Sbjct: 337 SSNPFSFDFGSSGPKSRSDTRNNIRTPLWTSSVFEKPESDLPNKTAFGFMRSNTSTFNQK 396

Query: 322 FDD 314
            DD
Sbjct: 397 CDD 399


>SPAC31G5.15 |||phosphatidylserine decarboxylase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 980

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 13/27 (48%), Positives = 14/27 (51%)
 Frame = +3

Query: 174 KTFLVFMLIYLSKGKRPCLIPCSTDIL 254
           KTF  F    L  G RPC  P + DIL
Sbjct: 751 KTFNEFFYRKLKPGSRPCAFPDNPDIL 777


>SPCC1322.12c |bub1||serine/threonine protein kinase
           Bub1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1044

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 19/74 (25%), Positives = 36/74 (48%)
 Frame = -3

Query: 580 FGHLMIEKDRFKVIKQILRCYSINRRSEQPLHFHITSFGEKSRNDMSRHNGYENWDIAFH 401
           +G L+I   R+K   ++    +++R + +PL   + +  E SR     HN + +     H
Sbjct: 138 YGSLLIRMQRWKEASEVFHA-AVSREA-RPLVRLLRNAAEFSRA-YDLHNAHPS----IH 190

Query: 400 EQPYLEVFPKEKLV 359
           + PY   FP  ++V
Sbjct: 191 DAPYSSPFPPPRIV 204


>SPAC31A2.09c |apm4||AP-2 adaptor complex subunit Apm4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 446

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 10/34 (29%), Positives = 19/34 (55%)
 Frame = -3

Query: 448 DMSRHNGYENWDIAFHEQPYLEVFPKEKLVYLTS 347
           ++  +  +EN +I F   P +E   K+K++Y  S
Sbjct: 286 ELMSYRSHENINIPFRIVPIVEQLSKQKIIYRIS 319


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,591,109
Number of Sequences: 5004
Number of extensions: 53342
Number of successful extensions: 168
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 167
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 351258950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)