Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10e06r
         (741 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0590 + 30177711-30178133,30178761-30179120,30179576-30180004    149   2e-36
01_06_1759 + 39689410-39689573,39689728-39689923,39690014-396901...    32   0.42 
12_01_0831 - 7688342-7688772,7690678-7692610,7693142-7693915,769...    28   6.8  
01_06_1691 - 39215192-39215283,39215341-39215413,39215874-392166...    28   9.0  

>02_05_0590 + 30177711-30178133,30178761-30179120,30179576-30180004
          Length = 403

 Score =  149 bits (362), Expect = 2e-36
 Identities = 72/192 (37%), Positives = 110/192 (57%), Gaps = 2/192 (1%)
 Frame = -3

Query: 598 IIIDLSFGHLMIEKDRFKVIKQILRCYSINRRSEQPLHFHITSFGEKSRNDMSRHNGYEN 419
           +++DL FG LM   +   + +QI+ CY++N RS  P H  +T    +    + R  GY+ 
Sbjct: 120 VVLDLEFGDLMRPNEIHSLTQQIMYCYAVNGRSTNPAHLWLTGCNGEMATHLQRIPGYDK 179

Query: 418 WDIAFHEQPYLEVFP--KEKLVYLTSESENIIESFDDDTYYIIGGLVDHNQYKGVCHNIS 245
           W I    + YLE F   KE LVYLT+++E +++  D    YIIGGLVD N++KG+    +
Sbjct: 180 WMIEKEAKSYLEAFEDRKENLVYLTADAETVLDDLDMSKIYIIGGLVDRNRWKGITLKKA 239

Query: 244 VEQGIRHGRLPLDKYINMKTRKVLTIDHVFEIMLKISEGLTWQETLIRVLPVRKGAHICN 65
           V+QGI+  +LP+  Y+ M + +VLT++ VFEIMLK  E   W+ +   V+P RK      
Sbjct: 240 VDQGIQCAKLPIGNYLKMSSSQVLTVNQVFEIMLKFVETRDWKTSFFHVIPQRKRGE-AE 298

Query: 64  ASNSNLSLDSEN 29
           A N  + +   N
Sbjct: 299 AGNDGVDISMNN 310


>01_06_1759 +
           39689410-39689573,39689728-39689923,39690014-39690103,
           39690221-39690277,39690391-39690460,39690747-39690811,
           39691408-39691462,39691704-39691831,39691919-39691950,
           39692205-39692274,39692723-39692824,39692921-39693010,
           39693084-39693232,39693620-39693731,39695332-39695412,
           39695481-39695705,39695815-39695937,39696021-39696137
          Length = 641

 Score = 32.3 bits (70), Expect = 0.42
 Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
 Frame = -3

Query: 331 IESFDDDTYYIIGGLVDHNQYKG-VCHNISVEQGIRHGRLPLDKYINMKTRKVLTIDHVF 155
           I+S+DD T+Y     VD  +YKG +  + SV +G+          +N+   K+L +  VF
Sbjct: 229 IKSYDDGTFYFDEKHVDAAEYKGPITTSASVVRGVTSFAAVASGKLNIPGEKILGLAKVF 288


>12_01_0831 -
           7688342-7688772,7690678-7692610,7693142-7693915,
           7694019-7694142,7696084-7696189,7696346-7696532
          Length = 1184

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 15/49 (30%), Positives = 24/49 (48%)
 Frame = -3

Query: 481 HITSFGEKSRNDMSRHNGYENWDIAFHEQPYLEVFPKEKLVYLTSESEN 335
           H  SFG    ND  +H+    WD   + Q + ++F  +KL  L  E+ +
Sbjct: 448 HSASFGPYVDNDQEQHDQISEWD--DNHQVHGDIFMFDKLDELNEETSH 494


>01_06_1691 -
           39215192-39215283,39215341-39215413,39215874-39216615,
           39216730-39217985,39218080-39218187,39218289-39218474,
           39218625-39218675
          Length = 835

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 16/60 (26%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
 Frame = -3

Query: 511 NRRSEQPLHFHITSFGEKSRNDMSRHNGYENWDIAFHEQPYLEVFPK--EKLVYLTSESE 338
           N R E+P +    +  + S  D   + GY N  +  HE+  L +  +  E++ YL  + E
Sbjct: 428 NVRKEEPANNESGTLDDSSCYDFDMNEGYRNLLLMLHEKTNLHIQCRLVEQIRYLLKDDE 487


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,205,759
Number of Sequences: 37544
Number of extensions: 286118
Number of successful extensions: 565
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 555
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 564
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1957111448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)