Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10e06r
         (741 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_35175| Best HMM Match : No HMM Matches (HMM E-Value=.)             182   3e-46
SB_41119| Best HMM Match : Sec23_helical (HMM E-Value=7.4e-37)         31   1.3  
SB_48929| Best HMM Match : BTB (HMM E-Value=1.4e-15)                   29   3.0  
SB_28263| Best HMM Match : Peptidase_M14 (HMM E-Value=0)               28   6.9  
SB_717| Best HMM Match : Glyco_hydro_63 (HMM E-Value=0.00015)          28   6.9  

>SB_35175| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 371

 Score =  182 bits (443), Expect = 3e-46
 Identities = 78/174 (44%), Positives = 122/174 (70%), Gaps = 2/174 (1%)
 Frame = -3

Query: 598 IIIDLSFGHLMIEKDRFKVIKQILRCYSINRRSEQPLHFHITSFGEKSRNDMSRHNG--Y 425
           I+IDL+F  LM ++D  K++KQ+ RCY++NRR++ P+  ++TSF  KSR+ +  H G  Y
Sbjct: 122 IVIDLNFDDLMSDRDMLKLMKQVQRCYAVNRRADHPVQMYLTSFEGKSRSRLD-HIGCHY 180

Query: 424 ENWDIAFHEQPYLEVFPKEKLVYLTSESENIIESFDDDTYYIIGGLVDHNQYKGVCHNIS 245
           + WD+    +   +VFPKE ++YLTS+S N++   D    Y+IGGLVDHN +KG C++ +
Sbjct: 181 DRWDVNIKSEHLTKVFPKEDIIYLTSDSPNMLTELDMSKVYVIGGLVDHNHHKGYCYDQA 240

Query: 244 VEQGIRHGRLPLDKYINMKTRKVLTIDHVFEIMLKISEGLTWQETLIRVLPVRK 83
           V+QG +H +LP+ ++I + TRKVLT++HVFEI+++  E   W+E    V+P RK
Sbjct: 241 VKQGFQHAQLPIGEFIKIATRKVLTVNHVFEILVRYCESKDWKEAFFHVMPQRK 294


>SB_41119| Best HMM Match : Sec23_helical (HMM E-Value=7.4e-37)
          Length = 875

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 12/51 (23%), Positives = 28/51 (54%)
 Frame = +1

Query: 298 LCNKYHHQSSQ*YFQIHLSSKPVFLLGTLQDKVVHEMQYPSFHSHCV*TYH 450
           LCN+Y    ++   Q+   ++  +  GT+ ++++ ++QY +  +H   T H
Sbjct: 10  LCNRYSTIHNRLIQQVQYYTQQTYATGTIHNRLMQQVQYYTQQTHSTGTIH 60


>SB_48929| Best HMM Match : BTB (HMM E-Value=1.4e-15)
          Length = 239

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
 Frame = -3

Query: 598 IIIDLSFGHLMIEKDRFKVIKQIL-RCYSINRRSEQPLHFHITSFGEKSRNDMSRHNG 428
           +IID+  G   ++++ FK+   +  RCY  NR        H+    ++ RN MS H G
Sbjct: 158 LIIDM-MGMYRLDQEEFKIHGSVGGRCYDSNRLDGYDRARHVLITCDECRNYMSAHPG 214


>SB_28263| Best HMM Match : Peptidase_M14 (HMM E-Value=0)
          Length = 1258

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -3

Query: 307 YYIIGGLVDHNQYKGVCHNISVEQGIR 227
           Y + GG+ D+N     C  I+VEQG +
Sbjct: 904 YSVSGGMQDYNYVHSNCFEITVEQGCK 930


>SB_717| Best HMM Match : Glyco_hydro_63 (HMM E-Value=0.00015)
          Length = 1052

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 13/42 (30%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
 Frame = -3

Query: 457 SRNDMSRHNGYENWDIAFHEQPYLEV---FPKEKLVYLTSES 341
           S  D   +  Y +WD+AFH  P+ ++   F K +L+   S++
Sbjct: 533 SMPDKWEYPWYASWDLAFHMLPFAKIDPDFAKHQLLLFLSDT 574


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,396,027
Number of Sequences: 59808
Number of extensions: 356826
Number of successful extensions: 678
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 636
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 676
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1998111622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)