Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10e06r
         (741 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325104-1|ABD14118.1|  180|Apis mellifera complementary sex det...    23   2.3  
DQ325130-1|ABD14144.1|  174|Apis mellifera complementary sex det...    22   5.3  
DQ325129-1|ABD14143.1|  174|Apis mellifera complementary sex det...    22   5.3  
DQ325128-1|ABD14142.1|  174|Apis mellifera complementary sex det...    22   5.3  
DQ325127-1|ABD14141.1|  174|Apis mellifera complementary sex det...    22   5.3  
DQ325126-1|ABD14140.1|  174|Apis mellifera complementary sex det...    22   5.3  
DQ325125-1|ABD14139.1|  174|Apis mellifera complementary sex det...    22   5.3  
DQ855486-1|ABH88173.1|  104|Apis mellifera chemosensory protein ...    22   7.0  
DQ325102-1|ABD14116.1|  183|Apis mellifera complementary sex det...    22   7.0  
DQ325101-1|ABD14115.1|  182|Apis mellifera complementary sex det...    22   7.0  
DQ325100-1|ABD14114.1|  183|Apis mellifera complementary sex det...    22   7.0  
DQ325099-1|ABD14113.1|  183|Apis mellifera complementary sex det...    22   7.0  
DQ325098-1|ABD14112.1|  183|Apis mellifera complementary sex det...    22   7.0  
DQ325097-1|ABD14111.1|  183|Apis mellifera complementary sex det...    22   7.0  
DQ325096-1|ABD14110.1|  183|Apis mellifera complementary sex det...    22   7.0  
DQ325095-1|ABD14109.1|  183|Apis mellifera complementary sex det...    22   7.0  
AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    21   9.2  
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    21   9.2  

>DQ325104-1|ABD14118.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 7/16 (43%), Positives = 13/16 (81%)
 Frame = +1

Query: 571 NDRNLNQ*LYHHVSYV 618
           ND N N+ LY++++Y+
Sbjct: 98  NDNNYNKKLYYNINYI 113


>DQ325130-1|ABD14144.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = -3

Query: 349 SESENIIESFDDDTYYIIGGLVDHNQYKGVCHNIS-VEQ 236
           S+   II S  ++  Y      ++N YK +C+NI+ +EQ
Sbjct: 76  SKEPKIISSLSNNYNY---SNYNNNNYKQLCYNINYIEQ 111


>DQ325129-1|ABD14143.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = -3

Query: 349 SESENIIESFDDDTYYIIGGLVDHNQYKGVCHNIS-VEQ 236
           S+   II S  ++  Y      ++N YK +C+NI+ +EQ
Sbjct: 76  SKEPKIISSLSNNYNY---SNYNNNNYKQLCYNINYIEQ 111


>DQ325128-1|ABD14142.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = -3

Query: 349 SESENIIESFDDDTYYIIGGLVDHNQYKGVCHNIS-VEQ 236
           S+   II S  ++  Y      ++N YK +C+NI+ +EQ
Sbjct: 76  SKEPKIISSLSNNYNY---SNYNNNNYKQLCYNINYIEQ 111


>DQ325127-1|ABD14141.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = -3

Query: 349 SESENIIESFDDDTYYIIGGLVDHNQYKGVCHNIS-VEQ 236
           S+   II S  ++  Y      ++N YK +C+NI+ +EQ
Sbjct: 76  SKEPKIISSLSNNYNY---SNYNNNNYKQLCYNINYIEQ 111


>DQ325126-1|ABD14140.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = -3

Query: 349 SESENIIESFDDDTYYIIGGLVDHNQYKGVCHNIS-VEQ 236
           S+   II S  ++  Y      ++N YK +C+NI+ +EQ
Sbjct: 76  SKEPKIISSLSNNYNY---SNYNNNNYKQLCYNINHIEQ 111


>DQ325125-1|ABD14139.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = -3

Query: 349 SESENIIESFDDDTYYIIGGLVDHNQYKGVCHNIS-VEQ 236
           S+   II S  ++  Y      ++N YK +C+NI+ +EQ
Sbjct: 76  SKEPKIISSLSNNYNY---SNYNNNNYKQLCYNINYIEQ 111


>DQ855486-1|ABH88173.1|  104|Apis mellifera chemosensory protein 5
           protein.
          Length = 104

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = +2

Query: 386 KIRLFMKCNIPVFIAIVSRHIISRFLTKTSYVKMQ 490
           KI++ +   I   I + ++  IS+FL    YV+ Q
Sbjct: 2   KIKILLFFTILALINVKAQDDISKFLKDRPYVQKQ 36


>DQ325102-1|ABD14116.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 7/33 (21%), Positives = 17/33 (51%)
 Frame = -3

Query: 472 SFGEKSRNDMSRHNGYENWDIAFHEQPYLEVFP 374
           ++   + N+ + +N Y N+   ++   Y+E  P
Sbjct: 88  NYNYSNYNNYNNNNNYNNYKKLYYNINYIEQIP 120


>DQ325101-1|ABD14115.1|  182|Apis mellifera complementary sex
           determiner protein.
          Length = 182

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 7/33 (21%), Positives = 17/33 (51%)
 Frame = -3

Query: 472 SFGEKSRNDMSRHNGYENWDIAFHEQPYLEVFP 374
           ++   + N+ + +N Y N+   ++   Y+E  P
Sbjct: 88  NYNYSNYNNYNNNNNYNNYKKLYYNINYIEQIP 120


>DQ325100-1|ABD14114.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 7/33 (21%), Positives = 17/33 (51%)
 Frame = -3

Query: 472 SFGEKSRNDMSRHNGYENWDIAFHEQPYLEVFP 374
           ++   + N+ + +N Y N+   ++   Y+E  P
Sbjct: 88  NYNYSNYNNYNNNNNYNNYKKLYYNINYIEQIP 120


>DQ325099-1|ABD14113.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 7/33 (21%), Positives = 17/33 (51%)
 Frame = -3

Query: 472 SFGEKSRNDMSRHNGYENWDIAFHEQPYLEVFP 374
           ++   + N+ + +N Y N+   ++   Y+E  P
Sbjct: 88  NYNYSNYNNYNNNNNYNNYKKLYYNINYIEQIP 120


>DQ325098-1|ABD14112.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 7/33 (21%), Positives = 17/33 (51%)
 Frame = -3

Query: 472 SFGEKSRNDMSRHNGYENWDIAFHEQPYLEVFP 374
           ++   + N+ + +N Y N+   ++   Y+E  P
Sbjct: 88  NYNYSNYNNYNNNNNYNNYKKLYYNINYIEQIP 120


>DQ325097-1|ABD14111.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 7/33 (21%), Positives = 17/33 (51%)
 Frame = -3

Query: 472 SFGEKSRNDMSRHNGYENWDIAFHEQPYLEVFP 374
           ++   + N+ + +N Y N+   ++   Y+E  P
Sbjct: 88  NYNYSNYNNYNNNNNYNNYKKLYYNINYIEQIP 120


>DQ325096-1|ABD14110.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 7/33 (21%), Positives = 17/33 (51%)
 Frame = -3

Query: 472 SFGEKSRNDMSRHNGYENWDIAFHEQPYLEVFP 374
           ++   + N+ + +N Y N+   ++   Y+E  P
Sbjct: 88  NYNYSNYNNYNNNNNYNNYKKLYYNINYIEQIP 120


>DQ325095-1|ABD14109.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 7/33 (21%), Positives = 17/33 (51%)
 Frame = -3

Query: 472 SFGEKSRNDMSRHNGYENWDIAFHEQPYLEVFP 374
           ++   + N+ + +N Y N+   ++   Y+E  P
Sbjct: 88  NYNYSNYNNYNNNNNYNNYKKLYYNINYIEQIP 120


>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = -3

Query: 79  AHICNASNSNL 47
           +HICNA+N  L
Sbjct: 232 SHICNATNKQL 242


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = -3

Query: 79  AHICNASNSNL 47
           +HICNA+N  L
Sbjct: 232 SHICNATNKQL 242


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 173,367
Number of Sequences: 438
Number of extensions: 3385
Number of successful extensions: 19
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23144850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)