Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10e06r
         (741 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g47680.1 68418.m05886 expressed protein contains Pfam profile...   144   4e-35
At4g03470.1 68417.m00474 ankyrin repeat family protein contains ...    29   4.3  
At2g07140.1 68415.m00816 F-box family protein contains Pfam:PF00...    28   7.5  
At2g01980.1 68415.m00133 sodium proton exchanger, putative (NHX7...    28   7.5  
At5g54620.1 68418.m06801 ankyrin repeat family protein contains ...    27   9.9  

>At5g47680.1 68418.m05886 expressed protein contains Pfam profile
           PF04243: Protein of unknown function (DUF425)
          Length = 344

 Score =  144 bits (350), Expect = 4e-35
 Identities = 69/191 (36%), Positives = 110/191 (57%), Gaps = 2/191 (1%)
 Frame = -3

Query: 598 IIIDLSFGHLMIEKDRFKVIKQILRCYSINRRSEQPLHFHITSFGEKSRNDMSRHNGYEN 419
           I++D+ F HLM E +   +++QI+ CY++N RS  P H  +T    K   ++ +  G+E 
Sbjct: 120 IVVDVDFAHLMSESEISSLVQQIMYCYAVNGRSTSPCHLWLTGVQGKMSTELDKLPGFEK 179

Query: 418 WDIAFHEQPYLEVFP--KEKLVYLTSESENIIESFDDDTYYIIGGLVDHNQYKGVCHNIS 245
           W I    + Y+E     K+ LVYLT++SE +++  D    YIIGGLVD N++KG+    +
Sbjct: 180 WFIEKESRCYIEAMADQKDNLVYLTADSETVLDDLDPKHIYIIGGLVDRNRFKGITMTKA 239

Query: 244 VEQGIRHGRLPLDKYINMKTRKVLTIDHVFEIMLKISEGLTWQETLIRVLPVRKGAHICN 65
            EQGI+  +LP+ +Y+ M + +VLT++ V EI++K  E   W+     V+P RK   +  
Sbjct: 240 QEQGIKTAKLPIGEYMKMSSSQVLTVNQVLEILVKFLETRDWKTAFFTVIPQRKRTGLDP 299

Query: 64  ASNSNLSLDSE 32
              S L   SE
Sbjct: 300 VDCSKLEHISE 310


>At4g03470.1 68417.m00474 ankyrin repeat family protein contains
           ankyrin repeats, Pfam domain PF00023
          Length = 683

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 16/35 (45%), Positives = 23/35 (65%), Gaps = 5/35 (14%)
 Frame = -3

Query: 574 HLMIEKDRFKVIKQIL-RC-YS---INRRSEQPLH 485
           HL +EK R KV+K+I  RC YS   +N++ +  LH
Sbjct: 343 HLAVEKGRIKVVKEICKRCPYSKLLLNKKGQNLLH 377


>At2g07140.1 68415.m00816 F-box family protein contains Pfam:PF00646
           F-box domain ; contains TIGRFAM TIGR01640: F-box protein
           interaction domain ; contains TIGRFAM TIGR01640: F-box
           protein interaction domain
          Length = 384

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
 Frame = -3

Query: 427 YENWDIAF-HEQPYLEVFPKEKLVYLTSESENIIESFDDDTYYIIG 293
           Y   D+ F H   +L    +EK V+L  +S+  +E  D+D  YI+G
Sbjct: 298 YPKPDVGFWHGLSFL--LDEEKKVFLCCKSKGWMEEEDEDNVYIVG 341


>At2g01980.1 68415.m00133 sodium proton exchanger, putative (NHX7)
           (SOS1) identical to putative Na+/H+ antiporter SOS1
           [Arabidopsis thaliana] gi|8515714|gb|AAF76139; Member of
           The Monovalent Cation:Proton Antiporter (CPA1) Family,
           PMID:11500563
          Length = 1146

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 10/42 (23%), Positives = 25/42 (59%)
 Frame = -3

Query: 202 YINMKTRKVLTIDHVFEIMLKISEGLTWQETLIRVLPVRKGA 77
           Y+ ++  +V+ +  ++ ++ +   GL W+E++I V    +GA
Sbjct: 358 YVYIQLSRVVVVGVLYPLLCRFGYGLDWKESIILVWSGLRGA 399


>At5g54620.1 68418.m06801 ankyrin repeat family protein contains
           Pfam domain, PF00023: Ankyrin repeat
          Length = 431

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -3

Query: 574 HLMIEKDRFKVIKQILRCYSINR 506
           HL   K+  K  K++L+C S+NR
Sbjct: 190 HLAAYKNNHKAFKELLKCISLNR 212


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,018,210
Number of Sequences: 28952
Number of extensions: 258184
Number of successful extensions: 587
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 580
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 586
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1633819784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)