Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10e06f
         (535 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q1CYR2 Cluster: Putative uncharacterized protein; n=2; ...    33   3.1  
UniRef50_UPI0000D571F3 Cluster: PREDICTED: similar to RNA (guani...    33   4.1  

>UniRef50_Q1CYR2 Cluster: Putative uncharacterized protein; n=2;
           Cystobacterineae|Rep: Putative uncharacterized protein -
           Myxococcus xanthus (strain DK 1622)
          Length = 256

 Score = 33.5 bits (73), Expect = 3.1
 Identities = 14/37 (37%), Positives = 22/37 (59%)
 Frame = -3

Query: 401 THLAFCVGSWQNISFIILQSSVYRYVKKSNLRK*FLE 291
           +H+ F VG W  +SF+++++  YRY    N R   LE
Sbjct: 65  SHVTFLVGIWMVVSFLLIEARRYRYYDLWNRRVRLLE 101


>UniRef50_UPI0000D571F3 Cluster: PREDICTED: similar to RNA
           (guanine-9-) methyltransferase domain containing 2; n=2;
           Endopterygota|Rep: PREDICTED: similar to RNA
           (guanine-9-) methyltransferase domain containing 2 -
           Tribolium castaneum
          Length = 294

 Score = 33.1 bits (72), Expect = 4.1
 Identities = 16/50 (32%), Positives = 22/50 (44%)
 Frame = +3

Query: 384 TKSQMRKWLKKVKWENHXXXXXXXXXXXXXXXXXXXXXXNIDIGPSRKAL 533
           TK QM+K+ K +KW+                        N+D+GPSRK L
Sbjct: 39  TKRQMKKYQKCLKWQQVKKEKRAKERLKSKEKRIQAKLNNVDLGPSRKQL 88


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 378,449,738
Number of Sequences: 1657284
Number of extensions: 5621910
Number of successful extensions: 10383
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 10254
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10382
length of database: 575,637,011
effective HSP length: 96
effective length of database: 416,537,747
effective search space used: 33739557507
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)