Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10e06f
         (535 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1235.10c |sec6||exocyst complex subunit Sec6|Schizosaccharom...    27   1.8  
SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc...    25   5.4  
SPCC1259.01c |rps1802|rps18-2, SPCC825.06c|40S ribosomal protein...    25   7.1  
SPAC6F6.08c |cdc16|bub2|two-component GAP Cdc16|Schizosaccharomy...    25   7.1  
SPBC16D10.11c |rps1801|rps18-1|40S ribosomal protein S18|Schizos...    25   7.1  

>SPCC1235.10c |sec6||exocyst complex subunit
           Sec6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 730

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 13/48 (27%), Positives = 27/48 (56%), Gaps = 4/48 (8%)
 Frame = +3

Query: 288 KFEELFPQITLFDIS-IDTGLQDNEGNILPRPYTK---SQMRKWLKKV 419
           ++ + F +   F +  ++ GL+D +  IL R YT+    ++R+W  K+
Sbjct: 335 EYRKFFEENAPFSVDEVEPGLEDGKDGILVREYTRLFTQKIREWSDKL 382


>SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein
            Ubr1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1958

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 15/47 (31%), Positives = 24/47 (51%)
 Frame = +3

Query: 294  EELFPQITLFDISIDTGLQDNEGNILPRPYTKSQMRKWLKKVKWENH 434
            +E F  +  F+I      ++   NIL R Y+K Q  K L+ V +E +
Sbjct: 920  DEYFDYVDPFNIHYSRNQREEAENILRRRYSK-QHSKHLESVVYEEY 965


>SPCC1259.01c |rps1802|rps18-2, SPCC825.06c|40S ribosomal protein
           S18|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 152

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -1

Query: 379 GLGKIFPSLSCNPVSIDMSKR 317
           G+G+ + ++ C    IDMSKR
Sbjct: 35  GVGRRYANIVCKKADIDMSKR 55


>SPAC6F6.08c |cdc16|bub2|two-component GAP Cdc16|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 299

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 8/24 (33%), Positives = 17/24 (70%)
 Frame = +1

Query: 343 DCKIMKEIFCQDPTQKAKCVSGLK 414
           DCK ++++  + P  ++KC+S L+
Sbjct: 5   DCKRLQKLAPKSPENQSKCISRLR 28


>SPBC16D10.11c |rps1801|rps18-1|40S ribosomal protein
           S18|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 152

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -1

Query: 379 GLGKIFPSLSCNPVSIDMSKR 317
           G+G+ + ++ C    IDMSKR
Sbjct: 35  GVGRRYANIVCKKADIDMSKR 55


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,661,756
Number of Sequences: 5004
Number of extensions: 26394
Number of successful extensions: 58
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 58
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 220420454
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)