Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10e06f
         (535 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0650 + 5500662-5501206,5502485-5502563,5503100-5503308,550...    27   9.5  
04_01_0260 - 3506672-3508981                                           27   9.5  

>12_01_0650 +
           5500662-5501206,5502485-5502563,5503100-5503308,
           5504396-5505146
          Length = 527

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = -1

Query: 193 YLNGSENVNRELLKADQELLNFKTPLQFIMHYCEFR 86
           Y+NGSE V R L       +N   P++ I  +C+F+
Sbjct: 454 YVNGSERVKRTLCHLSVVGIN-SFPVEAIKSFCQFK 488


>04_01_0260 - 3506672-3508981
          Length = 769

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = -3

Query: 404 LTHLAFCVGSWQNISFIILQSSVYRYVKKSN 312
           L H   C G W+ +   IL  +++R++  SN
Sbjct: 344 LHHALLCSGKWRMLRRFILSLNLFRFLVNSN 374


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,444,210
Number of Sequences: 37544
Number of extensions: 132051
Number of successful extensions: 236
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 236
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 236
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1190246000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)