Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10e06f
         (535 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_48168| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.4  
SB_34920| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.5  
SB_12942| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.3  
SB_10615| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.3  

>SB_48168| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 386

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 14/29 (48%), Positives = 18/29 (62%)
 Frame = +1

Query: 361 EIFCQDPTQKAKCVSGLKRLNGKIIKLKN 447
           ++F Q PTQ+A     LKRLN  I  L+N
Sbjct: 43  DLFGQHPTQRATNEDSLKRLNSYIDNLEN 71


>SB_34920| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 366

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = +2

Query: 290 VRGIISSDYSF*HIYRHWIAR**RKYFAKTLHKKPN 397
           +R I S+ YSF  +Y+ +++    K+FA + H   N
Sbjct: 270 LRRISSNQYSFSRVYKKYLSNRISKFFASSFHTFEN 305


>SB_12942| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 315

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = -2

Query: 105 CIIVSFAVV*QIIFINLLLCSYWTNNHRPSANN 7
           C++VS A    +I   +L C Y  + H P+A+N
Sbjct: 42  CLVVSLACS-DVIMAAVLFCQYLISFHSPTASN 73


>SB_10615| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1884

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 12/44 (27%), Positives = 24/44 (54%)
 Frame = +3

Query: 282  TVKFEELFPQITLFDISIDTGLQDNEGNILPRPYTKSQMRKWLK 413
            T+K  E  P  T+F + +DT  +  +GN+  R    +++ ++ K
Sbjct: 1281 TIKVSEPVPPTTIFSLLLDTDEKAFQGNVKTRMGLLTKLAEYFK 1324


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,720,255
Number of Sequences: 59808
Number of extensions: 171646
Number of successful extensions: 439
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 407
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 439
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1203486867
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)