Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10e05r
         (432 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit Bgs3|Schizo...    27   1.2  
SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated prote...    26   2.8  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    26   2.8  
SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pomb...    25   5.0  
SPAC4G9.05 |mpf1||meiotic PUF family protein 1|Schizosaccharomyc...    25   5.0  
SPAC1002.13c |psu1||beta-glucosidase Psu1 |Schizosaccharomyces p...    24   8.7  

>SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit
           Bgs3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1826

 Score = 27.1 bits (57), Expect = 1.2
 Identities = 13/35 (37%), Positives = 16/35 (45%)
 Frame = -3

Query: 163 LVFYYKHAFY*RMHRFFLIVYSSVNYKQIWRPWRV 59
           L F   + +Y  +   F I YS      IW PWRV
Sbjct: 662 LFFLDTYLWYMLISTMFSIAYSFYMGSAIWTPWRV 696


>SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated protein
            Mug36|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1646

 Score = 25.8 bits (54), Expect = 2.8
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = -1

Query: 318  RIERINILHVTPPLRSNPF*NVTSKKI 238
            ++ R+NI HV+ P+ S+ F +  SK I
Sbjct: 1213 KVGRLNINHVSEPIDSDEFADYLSKSI 1239


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with
           EF hand and WH2 motif |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1794

 Score = 25.8 bits (54), Expect = 2.8
 Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
 Frame = -1

Query: 432 PRRTVQGPTRPRRQGLDPQEDD-GQTRRPRRVHLRQETPR 316
           P+RT   P  P+R G+ PQ     Q   P+R  ++   P+
Sbjct: 637 PQRTGMQPMMPQRTGMQPQMPGMQQPMAPQRTGMQPMAPQ 676



 Score = 25.8 bits (54), Expect = 2.8
 Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
 Frame = -1

Query: 432 PRRTVQGPTRPRRQGLDPQEDD-GQTRRPRRVHLRQETPR 316
           P+RT   P  P+R G+ PQ     Q   P+R  ++   P+
Sbjct: 703 PQRTGMQPMMPQRTGMQPQMPGMQQPMAPQRTGMQPMAPQ 742



 Score = 25.4 bits (53), Expect = 3.8
 Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
 Frame = -1

Query: 432 PRRTVQGPTRPRRQGLDPQEDD-GQTRRPRRVHLRQETPR 316
           P+RT   P  P+R G+ PQ     Q   P+R  ++   P+
Sbjct: 532 PQRTGMQPMMPQRTGMQPQMTGFQQPMAPQRTGMQPMMPQ 571



 Score = 25.4 bits (53), Expect = 3.8
 Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
 Frame = -1

Query: 432 PRRTVQGPTRPRRQGLDPQEDD-GQTRRPRRVHLRQETPR 316
           P+RT   P  P+R G+ PQ     Q   P+R  ++   P+
Sbjct: 560 PQRTGMQPMMPQRTGMQPQMPGMQQPMAPQRTGMQPMMPQ 599



 Score = 25.4 bits (53), Expect = 3.8
 Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
 Frame = -1

Query: 432 PRRTVQGPTRPRRQGLDPQEDD-GQTRRPRRVHLRQETPR 316
           P+RT   P  P+R G+ PQ     Q   P+R  ++   P+
Sbjct: 609 PQRTGMQPMMPQRTGMQPQMPGMQQPMAPQRTGMQPMMPQ 648



 Score = 25.4 bits (53), Expect = 3.8
 Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
 Frame = -1

Query: 432 PRRTVQGPTRPRRQGLDPQEDD-GQTRRPRRVHLRQETPR 316
           P+RT   P  P+R G+ PQ     Q   P+R  ++   P+
Sbjct: 675 PQRTGMQPMMPQRTGMQPQMPGMQQPMAPQRTGMQPMMPQ 714



 Score = 25.0 bits (52), Expect = 5.0
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -1

Query: 432 PRRTVQGPTRPRRQGLDPQEDDG 364
           P+RT   P  P+R G+ PQ   G
Sbjct: 731 PQRTGMQPMAPQRTGMQPQMTGG 753


>SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1919

 Score = 25.0 bits (52), Expect = 5.0
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -1

Query: 285  PPLRSNPF*NVTSKKIWRKIVLCNN 211
            P LRS+P  + T+KK    ++LC N
Sbjct: 1631 PGLRSDPAESATNKKASEFVILCFN 1655


>SPAC4G9.05 |mpf1||meiotic PUF family protein 1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 581

 Score = 25.0 bits (52), Expect = 5.0
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +1

Query: 286 RYMQNIYTFNPRSFLSKMNSP 348
           R ++ IY  NP+SFL+   +P
Sbjct: 63  RELERIYEMNPKSFLTLRRTP 83


>SPAC1002.13c |psu1||beta-glucosidase Psu1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 417

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +2

Query: 257 FQNGFERNGGVTCKIFIRSIRGV 325
           F+NG  +NGG  C + I S  GV
Sbjct: 391 FENGAFQNGGSGCTVGITSGSGV 413


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,672,081
Number of Sequences: 5004
Number of extensions: 34110
Number of successful extensions: 90
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 154067960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)