Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10e05r
         (432 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0316 - 7408003-7409340                                           27   4.9  
04_03_0899 + 20662671-20662818,20663655-20663959,20664080-206642...    27   6.5  
08_02_1421 - 26961716-26963650,26967316-26967942,26969832-26970887     27   8.6  
01_01_0399 + 3036716-3037576                                           27   8.6  

>03_02_0316 - 7408003-7409340
          Length = 445

 Score = 27.5 bits (58), Expect = 4.9
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = -2

Query: 392 KASTLKKMMDKHAALGEFIFDKKLLGLN 309
           KA+ L KM++KH  LGE +      GLN
Sbjct: 415 KATELLKMLNKHKGLGECVDAVDFRGLN 442


>04_03_0899 +
           20662671-20662818,20663655-20663959,20664080-20664265,
           20665200-20665274,20665596-20665652
          Length = 256

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 12/54 (22%), Positives = 24/54 (44%)
 Frame = +1

Query: 250 GYISKRIRT*WRRYMQNIYTFNPRSFLSKMNSPRAACLSIIFLRVEALPARSRW 411
           GYI   +++ ++RYM+ + +F P     +          +I L++      S W
Sbjct: 158 GYIEDAVKSAYKRYMKYLESFGPEENYLRKKVENELGTKMIHLKMRCSGVGSEW 211


>08_02_1421 - 26961716-26963650,26967316-26967942,26969832-26970887
          Length = 1205

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = -1

Query: 240 IWRKIVLCNNQSIIIFSFKQIKMYKL*CF 154
           +WRK  L +++SII  ++  +KM K  C+
Sbjct: 188 VWRKNGLLDDKSIIRRAYDDLKMRKFECY 216


>01_01_0399 + 3036716-3037576
          Length = 286

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 5/50 (10%)
 Frame = +1

Query: 280 WRRYMQNIYTFNPRSF-----LSKMNSPRAACLSIIFLRVEALPARSRWP 414
           W+R+ ++   F PR+      LS   S  AA    + LR    P R+ WP
Sbjct: 191 WQRWWEHHDAFVPRAHDALLRLSSATSASAAAEDFLRLRSALSPGRNDWP 240


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,921,850
Number of Sequences: 37544
Number of extensions: 185301
Number of successful extensions: 378
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 377
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 378
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 814473264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)