Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10e05f
         (460 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_26677| Best HMM Match : AT_hook (HMM E-Value=3.1)                   28   3.2  
SB_45707| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.3  
SB_21296| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.6  
SB_360| Best HMM Match : 7tm_1 (HMM E-Value=0.015)                     27   7.5  

>SB_26677| Best HMM Match : AT_hook (HMM E-Value=3.1)
          Length = 355

 Score = 28.3 bits (60), Expect = 3.2
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +1

Query: 37  RQGLDPQEDDGQTRRPRRVHLRQETPR 117
           R+   PQ+ D Q  RPR+   RQ  PR
Sbjct: 41  RKTSKPQDQDKQAARPRQARTRQARPR 67


>SB_45707| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 730

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +1

Query: 28  RPRRQGLDPQEDDGQTRRPRRVHLR 102
           RPR+    PQ+ D Q  RPR+  L+
Sbjct: 41  RPRQASRKPQDQDKQAARPRQASLK 65


>SB_21296| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 358

 Score = 27.5 bits (58), Expect = 5.6
 Identities = 16/39 (41%), Positives = 22/39 (56%)
 Frame = +2

Query: 2   LDEQYKGQRDLAGKASTLKKMMDKHAALGEFIFDKKLLG 118
           L EQ    + LA   STL+++      LGE+ FDK+ LG
Sbjct: 101 LGEQVDSIKTLANYVSTLQRL---GGGLGEYQFDKETLG 136


>SB_360| Best HMM Match : 7tm_1 (HMM E-Value=0.015)
          Length = 251

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 20/72 (27%), Positives = 37/72 (51%)
 Frame = -3

Query: 332 IHN*KKPMHSLIKRMLIIKH*SLYIFICLNEKIIMDWLLHNTILRHIFLLVTFQNGFERN 153
           IH  ++ M + IKR   +   +L+I   ++   ++ WL H  I++ ++ L      FE+N
Sbjct: 142 IHQ-QREMRTAIKRERYLAF-TLFIVTVMS---LVTWLPH-VIVQCVWFLEAVPITFEQN 195

Query: 152 GGVTCKIFIRSI 117
            G  C ++  SI
Sbjct: 196 NGTICLMYANSI 207


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,699,067
Number of Sequences: 59808
Number of extensions: 255937
Number of successful extensions: 551
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 491
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 550
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 932979724
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)