Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10e05f
         (460 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006627-3|AAK85461.1|  504|Caenorhabditis elegans Hypothetical ...    27   6.6  
Z82271-6|CAB05213.1| 1091|Caenorhabditis elegans Hypothetical pr...    27   8.7  
Z73102-19|CAA97421.1| 1091|Caenorhabditis elegans Hypothetical p...    27   8.7  
AF067607-12|AAF98615.2|  425|Caenorhabditis elegans Hypothetical...    27   8.7  
AF003144-2|AAB54193.2|  217|Caenorhabditis elegans Hypothetical ...    27   8.7  

>AC006627-3|AAK85461.1|  504|Caenorhabditis elegans Hypothetical
           protein E01A2.4 protein.
          Length = 504

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 16/53 (30%), Positives = 22/53 (41%)
 Frame = +1

Query: 1   PRRTVQGPTRPRRQGLDPQEDDGQTRRPRRVHLRQETPRIERINILHVTPPLR 159
           PRRT + P+ PRR+ +           PRR   R  +P   R       PP +
Sbjct: 108 PRRTRRSPSPPRRRRISRSPVRRSRSPPRRQVSRSRSPPPRRQQRSRSPPPAK 160


>Z82271-6|CAB05213.1| 1091|Caenorhabditis elegans Hypothetical
           protein F54E12.2 protein.
          Length = 1091

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 13/46 (28%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
 Frame = -2

Query: 183 GYISKRIRT*WRR-YMQNIYTFNPRSFLSKMNSPRAACLSIIFLRV 49
           G+I +R R   +   +QN + F PR   +  N  + +C+ ++ LR+
Sbjct: 800 GFIPRRNRRAGKEGEVQNPFNFGPRDLAAGSNFEKMSCVLMLLLRL 845


>Z73102-19|CAA97421.1| 1091|Caenorhabditis elegans Hypothetical
           protein F54E12.2 protein.
          Length = 1091

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 13/46 (28%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
 Frame = -2

Query: 183 GYISKRIRT*WRR-YMQNIYTFNPRSFLSKMNSPRAACLSIIFLRV 49
           G+I +R R   +   +QN + F PR   +  N  + +C+ ++ LR+
Sbjct: 800 GFIPRRNRRAGKEGEVQNPFNFGPRDLAAGSNFEKMSCVLMLLLRL 845


>AF067607-12|AAF98615.2|  425|Caenorhabditis elegans Hypothetical
           protein C18H7.1 protein.
          Length = 425

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +3

Query: 309 HRFFLIVYSSVNYKQIWRPW 368
           HR  LIVYS ++Y++   PW
Sbjct: 71  HRVALIVYSGLSYRREVMPW 90


>AF003144-2|AAB54193.2|  217|Caenorhabditis elegans Hypothetical
           protein C55C2.3 protein.
          Length = 217

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = +2

Query: 356 MASMARQIELVISVIN**CHIVFFFPLIIS 445
           M S  R +EL+  ++N  CH   + PL+++
Sbjct: 24  MHSSGRNLELIRDILNLYCHAKSYVPLVLN 53


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,766,113
Number of Sequences: 27780
Number of extensions: 205136
Number of successful extensions: 438
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 432
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 438
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 820565746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)