Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10e05f
         (460 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g18570.1 68418.m02195 GTP1/OBG family protein similar to SP|P...    27   8.1  
At4g38470.1 68417.m05436 protein kinase family protein similar t...    27   8.1  
At2g15880.1 68415.m01820 leucine-rich repeat family protein / ex...    27   8.1  
At1g75130.1 68414.m08725 cytochrome P450 family protein similar ...    27   8.1  

>At5g18570.1 68418.m02195 GTP1/OBG family protein similar to
           SP|P20964 Spo0B-associated GTP-binding protein {Bacillus
           subtilis}; contains Pfam profile PF01018: GTP1/OBG
           family
          Length = 681

 Score = 26.6 bits (56), Expect = 8.1
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +1

Query: 22  PTRPRRQGLDPQEDDGQTRRPRRVHLRQE 108
           P+R R+    P +  G+TR PR+  L++E
Sbjct: 18  PSRTRKIFAKPDKVSGRTRSPRKTKLQRE 46


>At4g38470.1 68417.m05436 protein kinase family protein similar to
           protein kinase [gi:170047] from Glycine max; contains
           Pfam protein kinase domain PF00069
          Length = 575

 Score = 26.6 bits (56), Expect = 8.1
 Identities = 11/44 (25%), Positives = 23/44 (52%)
 Frame = +1

Query: 13  VQGPTRPRRQGLDPQEDDGQTRRPRRVHLRQETPRIERINILHV 144
           +Q  + P +Q   P++++GQT     V +  +   +  IN+ H+
Sbjct: 247 LQSQSWPMQQSFSPEKENGQTGARTHVPIPNDGTDVWEINLKHL 290


>At2g15880.1 68415.m01820 leucine-rich repeat family protein /
           extensin family protein similar to extensin-like protein
           [Lycopersicon esculentum] gi|5917664|gb|AAD55979;
           contains leucine-rich repeats, Pfam:PF00560; contains
           proline rich extensin domains, INTERPRO:IPR002965
          Length = 727

 Score = 26.6 bits (56), Expect = 8.1
 Identities = 15/56 (26%), Positives = 23/56 (41%)
 Frame = +1

Query: 1   PRRTVQGPTRPRRQGLDPQEDDGQTRRPRRVHLRQETPRIERINILHVTPPLRSNP 168
           P R V  P  P+     PQ +D   + P +       P+    +++H  PP  S P
Sbjct: 402 PTRPVHKPQPPKES---PQPNDPYNQSPVKFRRSPPPPQQPHHHVVHSPPPASSPP 454


>At1g75130.1 68414.m08725 cytochrome P450 family protein similar to
           Cytochrome P450 72A1 (SP:Q05047) [Catharanthus roseus]
          Length = 505

 Score = 26.6 bits (56), Expect = 8.1
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +3

Query: 315 FFLIVYSSVNYKQIWRPWRVK 377
           FF +V+  + Y  IW PWR++
Sbjct: 11  FFFLVFRFI-YSNIWVPWRIQ 30


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,867,363
Number of Sequences: 28952
Number of extensions: 172630
Number of successful extensions: 385
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 380
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 385
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 762235320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)