Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10e04r
         (794 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1450.09c |||phospholipase |Schizosaccharomyces pombe|chr 3||...    27   3.1  
SPAC11E3.10 |||VanZ-like family protein|Schizosaccharomyces pomb...    26   5.4  
SPCC736.04c |gma12||alpha-1,2-galactosyltransferase Gma12 |Schiz...    26   5.4  
SPBC1683.02 |||adenine deaminase |Schizosaccharomyces pombe|chr ...    26   5.4  
SPBC11C11.11c ||SPBC3B8.12|ATP-dependent DNA helicase Irc3 |Schi...    26   7.1  
SPBC1709.12 |rid1||GTPase binding protein Rid1|Schizosaccharomyc...    25   9.4  
SPAC8F11.06 |||nuclear envelope protein |Schizosaccharomyces pom...    25   9.4  

>SPCC1450.09c |||phospholipase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 633

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 15/37 (40%), Positives = 20/37 (54%)
 Frame = +1

Query: 346 FPGMSFGISTAEEIIPTVSDRHSIT*YVPDTNTFSKL 456
           +P  S  +ST E ++ T S       Y+PDTNTF  L
Sbjct: 457 WPDGSSLVSTYERVLATNSSGVRGFPYIPDTNTFLAL 493


>SPAC11E3.10 |||VanZ-like family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 162

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = +2

Query: 263 IPCKVYNIVCQFI*AFVSIGISFWIVDLSR 352
           +P  + + VC F   F+   + +W+ DLSR
Sbjct: 35  LPVPINDKVCHFFVFFLLTLVFYWVFDLSR 64


>SPCC736.04c |gma12||alpha-1,2-galactosyltransferase Gma12
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 375

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = +1

Query: 436 TNTFSKLISNLTSRTAIIKESFRIAPTIGKV*MPKFNSTDLH 561
           T+T    IS + S TA + E+F   PT+  V +    +TD H
Sbjct: 58  TDTLRVTISEVVSVTATLTETFTATPTVTSV-VHALATTDPH 98


>SPBC1683.02 |||adenine deaminase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 339

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 18/45 (40%), Positives = 24/45 (53%)
 Frame = +2

Query: 578 RLSIREGINFEIVSSLLISRRTEKIRDRRLPSESLRTSFSRIXSF 712
           +L  R GI+FE V   LI  R + +RD  + S+ L   F R  SF
Sbjct: 103 QLHTRRGISFETVIKGLIRARDDAMRDFHIYSQ-LIMCFIREMSF 146


>SPBC11C11.11c ||SPBC3B8.12|ATP-dependent DNA helicase Irc3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 606

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = +2

Query: 47  NRDYTIIEISNEEYVTLSIIFQILSFYNKLLISYSN 154
           N+D +I  +S   +V + +   +LSF  K+LI  +N
Sbjct: 438 NKDRSIFNLSTNAWVAVGMGRYVLSFLQKVLIIDTN 473


>SPBC1709.12 |rid1||GTPase binding protein Rid1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 367

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 14/29 (48%), Positives = 20/29 (68%)
 Frame = +2

Query: 575 SRLSIREGINFEIVSSLLISRRTEKIRDR 661
           S LS+ EGI  EIVSSL   ++ +K R++
Sbjct: 67  SLLSLNEGIKMEIVSSL--QQKDQKKRNK 93


>SPAC8F11.06 |||nuclear envelope protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 297

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = -2

Query: 70  FNYCIVSI*LFALFKIDF 17
           FN C+ SI L+ LFKI F
Sbjct: 127 FNACVASIFLYFLFKIVF 144


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,035,824
Number of Sequences: 5004
Number of extensions: 64646
Number of successful extensions: 184
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 184
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 387388442
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)