Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10e04r
(794 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_02_0557 + 11470259-11472307 31 1.1
02_02_0469 + 10691648-10691692,10691755-10691907,10692043-106920... 30 2.4
08_01_0841 + 8223768-8223871,8227749-8228745,8228779-8228828,822... 29 3.2
04_04_1189 + 31586991-31587291,31587358-31587397,31587449-315875... 29 4.3
04_01_0332 + 4378111-4378329,4378862-4378997,4379113-4379165,437... 29 5.6
03_06_0407 - 33714563-33714636,33714966-33715152,33715943-337160... 28 7.4
06_01_0024 + 233101-233189,233259-233340,233430-233493,233636-23... 28 9.8
01_07_0246 + 42253379-42253642,42253846-42254084,42254267-422544... 28 9.8
>02_02_0557 + 11470259-11472307
Length = 682
Score = 31.1 bits (67), Expect = 1.1
Identities = 22/72 (30%), Positives = 39/72 (54%), Gaps = 2/72 (2%)
Frame = -1
Query: 521 PIVGAILKLSLIIAVRDVRLEISLLKVFVSGTYHVIEWRSETVGIISSAVEIPKL--IPG 348
P+V LS +I + + S ++ ++V+ W S VG + A+++ KL +PG
Sbjct: 238 PLVSTRFNLSAVIT-DEAYVGFSASIGTMTSQHYVLGW-SFGVGTQAPAIDMDKLPRLPG 295
Query: 347 KGQQSKKKFR*K 312
G++SKK +R K
Sbjct: 296 TGRRSKKSYRPK 307
>02_02_0469 + 10691648-10691692,10691755-10691907,10692043-10692093,
10692162-10692224,10692327-10693031,10693128-10693223,
10693307-10695547
Length = 1117
Score = 29.9 bits (64), Expect = 2.4
Identities = 18/57 (31%), Positives = 29/57 (50%)
Frame = +2
Query: 497 VSESLLRSAKSKCLNSIRRTFICCLSSRLSIREGINFEIVSSLLISRRTEKIRDRRL 667
++E + + K +C R CC RL + GIN EI ++ R T+K R+ +L
Sbjct: 964 LAEPGINAFKCQCAKFTRDGIPCCHIFRLFTQFGIN-EIPEQYIMPRWTKKFREEQL 1019
>08_01_0841 +
8223768-8223871,8227749-8228745,8228779-8228828,
8228896-8230396
Length = 883
Score = 29.5 bits (63), Expect = 3.2
Identities = 22/69 (31%), Positives = 33/69 (47%)
Frame = +2
Query: 395 PFLTAIRLRDTSPTRIPSVSLFLISRLELRLSKRVSESLLRSAKSKCLNSIRRTFICCLS 574
PFL + +R T T++P+ L LR S+R +S C N R CC+
Sbjct: 608 PFLQLLNVRKTRITKLPNEVTQLGKLQLLRASRRTEDS--------CHNRRNR---CCID 656
Query: 575 SRLSIREGI 601
S L++ +GI
Sbjct: 657 SALTVPKGI 665
>04_04_1189 + 31586991-31587291,31587358-31587397,31587449-31587534,
31587535-31588097,31588250-31589913,31589956-31590066,
31590152-31591181,31591234-31591406,31591535-31591814,
31592275-31592331
Length = 1434
Score = 29.1 bits (62), Expect = 4.3
Identities = 12/26 (46%), Positives = 19/26 (73%)
Frame = -2
Query: 325 NSDRNERLYKLANYIIHLARNLLVRN 248
+SDR+E+L K+ + IIH R+L + N
Sbjct: 1164 HSDRDEQLLKIPSNIIHSLRDLFISN 1189
>04_01_0332 +
4378111-4378329,4378862-4378997,4379113-4379165,
4379286-4379394,4379467-4379603,4379698-4379894,
4379979-4380128,4380233-4380293,4380380-4380500,
4380901-4380991,4381116-4381209,4381446-4381541,
4382176-4382316,4382592-4382642,4383093-4383161,
4384072-4384142,4384244-4384336,4384820-4384910,
4386164-4386235,4387226-4387351,4387537-4387593,
4387926-4388000,4388570-4388658,4388814-4388891,
4389308-4389446,4389868-4389977,4390151-4390250,
4390548-4390655
Length = 977
Score = 28.7 bits (61), Expect = 5.6
Identities = 14/47 (29%), Positives = 26/47 (55%)
Frame = -3
Query: 507 DSETLFDNRSSRREIRNKLTEGIRVGDVSRNRMAVRNGRNYFFSGGD 367
D+ETLFD S + I + E R+ ++ + +A+ G +F +G +
Sbjct: 734 DNETLFDIVSIKTPIGLSIDEKCRINHLASSMIALSQGIPFFHAGDE 780
>03_06_0407 -
33714563-33714636,33714966-33715152,33715943-33716093,
33716520-33716632,33717022-33717085,33717180-33717391,
33717540-33717621,33717811-33717866,33718004-33718072,
33718524-33718772,33718873-33719049,33719556-33719702,
33719794-33719926,33720093-33720307
Length = 642
Score = 28.3 bits (60), Expect = 7.4
Identities = 15/65 (23%), Positives = 30/65 (46%)
Frame = +2
Query: 374 PLKK*FRPFLTAIRLRDTSPTRIPSVSLFLISRLELRLSKRVSESLLRSAKSKCLNSIRR 553
P+ + FR T I ++P V + + L + + + +S K +C+ +++R
Sbjct: 144 PIMQTFREIETCIECSALRQIQVPEV-FYYAQKAVLHPTAPLFDQEAQSLKPRCVRALKR 202
Query: 554 TFICC 568
FI C
Sbjct: 203 IFILC 207
>06_01_0024 + 233101-233189,233259-233340,233430-233493,233636-233826,
233901-233978,234133-234207,234436-234506,234710-234826,
234915-235016,235196-235316,235451-235537,235708-235794,
236237-236338,236629-236692,237554-237580,237581-237636,
238185-238256,238540-238622,238953-239001,239335-239397,
239633-239722,239823-239909,240072-240146,240222-240280,
240511-240604,240681-240899,240998-241092,241504-241594,
241663-241767,241847-241885,242263-242352,242538-242639,
242837-242918,243075-243160,243264-243362
Length = 1030
Score = 27.9 bits (59), Expect = 9.8
Identities = 21/61 (34%), Positives = 29/61 (47%)
Frame = +2
Query: 557 FICCLSSRLSIREGINFEIVSSLLISRRTEKIRDRRLPSESLRTSFSRIXSFPFRVDSVL 736
F+ +L + EGIN EIV S+LI R + E +FSR FP V++
Sbjct: 869 FVTRRLEQLLVDEGINCEIVRSVLIERANCPYLASQTAIE--MEAFSRTEDFPKIVEAYS 926
Query: 737 R 739
R
Sbjct: 927 R 927
>01_07_0246 +
42253379-42253642,42253846-42254084,42254267-42254471,
42254719-42254787,42254869-42255055,42255760-42255926,
42256350-42257045
Length = 608
Score = 27.9 bits (59), Expect = 9.8
Identities = 23/87 (26%), Positives = 35/87 (40%)
Frame = -3
Query: 489 DNRSSRREIRNKLTEGIRVGDVSRNRMAVRNGRNYFFSGGDSETHSRERSTIQKEIPIET 310
DN+ RE R + E + S N V + D +HS +T+Q E + +
Sbjct: 234 DNKVEAREQRLRFVESNPLNSYSSNEELVMMPKRRGGRDKDIISHSEWLNTVQAEPDVIS 293
Query: 309 NAYINWQTILYTLQGIYLCGILMQMFN 229
++I I L G+ CG L N
Sbjct: 294 MSFI---PITSLLNGVPGCGFLNHAIN 317
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,744,048
Number of Sequences: 37544
Number of extensions: 349210
Number of successful extensions: 786
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 771
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 786
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2150667972
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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