Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10e04r
         (794 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_11973| Best HMM Match : Cupin_1 (HMM E-Value=3.4)                   31   1.4  
SB_16595| Best HMM Match : Peptidase_A17 (HMM E-Value=9.1e-11)         30   2.5  
SB_38712| Best HMM Match : TFIID_20kDa (HMM E-Value=0.0045)            29   3.3  
SB_30500| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.6  
SB_12216| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.6  

>SB_11973| Best HMM Match : Cupin_1 (HMM E-Value=3.4)
          Length = 394

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 19/68 (27%), Positives = 35/68 (51%)
 Frame = +2

Query: 98  SIIFQILSFYNKLLISYSNLISFGIEVEDHQRVFIIFLFSCPLSLNICMRIPHK*IPCKV 277
           SI   +++     +I+  N I  G EVED   VF+       ++L++C+  PH+ I  +V
Sbjct: 277 SIPKSLVTHGGSCIIAMENYI--GYEVEDVSDVFVHLSVCLTINLSVCLSDPHEQIGYEV 334

Query: 278 YNIVCQFI 301
            ++   F+
Sbjct: 335 EDVSDVFV 342


>SB_16595| Best HMM Match : Peptidase_A17 (HMM E-Value=9.1e-11)
          Length = 1692

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 21/56 (37%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
 Frame = -3

Query: 588  ILSREERQQM-KVRRIEFRHLDFADRRSDSETLFDNRSSRREIRNKLTEGIRVGDV 424
            +LS+  R+ + K  R+EF   D   +  DSET+  N  ++   R K+ EG+RVGD+
Sbjct: 1337 VLSKRGRKVIEKEMRLEF---DRVLQLVDSETVL-NMLNKTSTRFKVYEGVRVGDI 1388


>SB_38712| Best HMM Match : TFIID_20kDa (HMM E-Value=0.0045)
          Length = 90

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 14/45 (31%), Positives = 25/45 (55%)
 Frame = +2

Query: 167 GIEVEDHQRVFIIFLFSCPLSLNICMRIPHK*IPCKVYNIVCQFI 301
           G EVED   VF+       ++L++C+  PH+ I  +V ++   F+
Sbjct: 43  GYEVEDVSDVFVHLSVCLTINLSVCLSDPHEQIGYEVEDVSDVFV 87


>SB_30500| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2014

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = -2

Query: 331  KRNSDRNERLYKLANYIIHLARNLLVRNSHADVQR*WTG 215
            +RN+++N  + +L  +  H+  N  +RN   + QR  TG
Sbjct: 1168 RRNNEKNVDIKQLKRFFSHVKSNTKIRNDDNESQRMRTG 1206


>SB_12216| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2992

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 6/49 (12%)
 Frame = -3

Query: 297  NWQTILYTLQGIYLCGILMQMFNDNGQEN------KKIMKTRWWSSTSM 169
            NW  +L +    Y+ GIL+  F D G E+      +  M+  WWS  SM
Sbjct: 2628 NWPLVLVSFLSAYIMGILI-WFLDAGNEHFPRSFIRGSMEGFWWSYVSM 2675


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,437,710
Number of Sequences: 59808
Number of extensions: 431621
Number of successful extensions: 1090
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1025
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1089
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2191792647
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)