Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10e04r
(794 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U13019-7|AAC24445.2| 689|Caenorhabditis elegans Hypothetical pr... 33 0.24
Z71265-6|CAA95837.1| 399|Caenorhabditis elegans Hypothetical pr... 32 0.54
Z71258-17|CAA95787.1| 399|Caenorhabditis elegans Hypothetical p... 32 0.54
U30248-1|AAC13874.1| 399|Caenorhabditis elegans transcription f... 32 0.54
U13614-1|AAA21347.1| 399|Caenorhabditis elegans protein ( Caeno... 32 0.54
U40030-7|AAT81189.1| 525|Caenorhabditis elegans Hypothetical pr... 29 5.1
U41533-12|AAA83173.1| 521|Caenorhabditis elegans Hypothetical p... 28 6.7
U40938-4|AAK68283.1| 447|Caenorhabditis elegans Cyclophilin fam... 28 8.9
U40938-3|AAA81696.1| 466|Caenorhabditis elegans Cyclophilin fam... 28 8.9
U37429-7|AAA79351.2| 218|Caenorhabditis elegans Hypothetical pr... 28 8.9
U31078-1|AAC47130.1| 466|Caenorhabditis elegans cyclophilin iso... 28 8.9
CU457740-2|CAM36332.1| 301|Caenorhabditis elegans Hypothetical ... 28 8.9
>U13019-7|AAC24445.2| 689|Caenorhabditis elegans Hypothetical
protein T12A2.6 protein.
Length = 689
Score = 33.1 bits (72), Expect = 0.24
Identities = 38/147 (25%), Positives = 63/147 (42%), Gaps = 2/147 (1%)
Frame = -3
Query: 606 KFIPSRILSREER-QQMKVRRIEFRHLDFADRRSDSETLFDNRSSRREIRNKLTEGIRVG 430
KF PS ++ + + ++ + F ++F+ + S TL + + + NK + V
Sbjct: 395 KFTPSNMIFESTKTKSLETMQTFFGAINFS-KTSGFGTLMEVLAKEKIRLNKFRD--YVS 451
Query: 429 DVSRNRMAVRNGRNYFFSGGDSETHSRERSTIQKEIPI-ETNAYINWQTILYTLQGIYLC 253
+ +R+ VRN R YF E + RS +Q I TN +N IL T++ IY
Sbjct: 452 KLDDDRILVRNLRKYFDVTTTEEIGKKVRSALQSIRDISSTNEDLN--EILKTVRDIYRS 509
Query: 252 GILMQMFNDNGQENKKIMKTRWWSSTS 172
+F +K RW S S
Sbjct: 510 SNSASIFMLLSDISKLSRDARWLDSWS 536
>Z71265-6|CAA95837.1| 399|Caenorhabditis elegans Hypothetical
protein M05B5.5a protein.
Length = 399
Score = 31.9 bits (69), Expect = 0.54
Identities = 19/58 (32%), Positives = 30/58 (51%)
Frame = -3
Query: 594 SRILSREERQQMKVRRIEFRHLDFADRRSDSETLFDNRSSRREIRNKLTEGIRVGDVS 421
SR SR Q I RH + R SD+E++ D++ + R +N E +RV D++
Sbjct: 263 SRATSRRRVQGPPSSGIPTRHSS-SSRLSDNESMSDDKDTDRRSQNNARERVRVRDIN 319
>Z71258-17|CAA95787.1| 399|Caenorhabditis elegans Hypothetical
protein M05B5.5a protein.
Length = 399
Score = 31.9 bits (69), Expect = 0.54
Identities = 19/58 (32%), Positives = 30/58 (51%)
Frame = -3
Query: 594 SRILSREERQQMKVRRIEFRHLDFADRRSDSETLFDNRSSRREIRNKLTEGIRVGDVS 421
SR SR Q I RH + R SD+E++ D++ + R +N E +RV D++
Sbjct: 263 SRATSRRRVQGPPSSGIPTRHSS-SSRLSDNESMSDDKDTDRRSQNNARERVRVRDIN 319
>U30248-1|AAC13874.1| 399|Caenorhabditis elegans transcription
factor E12/47 homolog protein.
Length = 399
Score = 31.9 bits (69), Expect = 0.54
Identities = 19/58 (32%), Positives = 30/58 (51%)
Frame = -3
Query: 594 SRILSREERQQMKVRRIEFRHLDFADRRSDSETLFDNRSSRREIRNKLTEGIRVGDVS 421
SR SR Q I RH + R SD+E++ D++ + R +N E +RV D++
Sbjct: 263 SRATSRRRVQGPPSSGIPTRHSS-SSRLSDNESMSDDKDTDRRSQNNARERVRVRDIN 319
>U13614-1|AAA21347.1| 399|Caenorhabditis elegans protein (
Caenorhabditis elegansN2 basic-helix-loop-helix
transcription factor E12/47homolog mRNA, complete cds.
).
Length = 399
Score = 31.9 bits (69), Expect = 0.54
Identities = 19/58 (32%), Positives = 30/58 (51%)
Frame = -3
Query: 594 SRILSREERQQMKVRRIEFRHLDFADRRSDSETLFDNRSSRREIRNKLTEGIRVGDVS 421
SR SR Q I RH + R SD+E++ D++ + R +N E +RV D++
Sbjct: 263 SRATSRRRVQGPPSSGIPTRHSS-SSRLSDNESMSDDKDTDRRSQNNARERVRVRDIN 319
>U40030-7|AAT81189.1| 525|Caenorhabditis elegans Hypothetical
protein T13C2.2 protein.
Length = 525
Score = 28.7 bits (61), Expect = 5.1
Identities = 20/62 (32%), Positives = 34/62 (54%)
Frame = +1
Query: 385 IIPTVSDRHSIT*YVPDTNTFSKLISNLTSRTAIIKESFRIAPTIGKV*MPKFNSTDLHL 564
I PTVS++ S + + F LIS++ + A I E + T+G V K +S+++ +
Sbjct: 276 IEPTVSNQASGLRGLLENPNFDSLISSIVQKGAKIAEG-PLPQTVGAVDHTKLSSSEMGI 334
Query: 565 LS 570
LS
Sbjct: 335 LS 336
>U41533-12|AAA83173.1| 521|Caenorhabditis elegans Hypothetical
protein R05F9.11 protein.
Length = 521
Score = 28.3 bits (60), Expect = 6.7
Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 4/66 (6%)
Frame = -3
Query: 627 NSDETISKFIPSRILSREERQQMKVRRIEFRHLD--FADR--RSDSETLFDNRSSRREIR 460
N +ETI +PSR R+ RQ V + LD FA R + T D+ + R +
Sbjct: 262 NVEETIEPSLPSRKRKRKRRQSKTVPISDPEVLDDLFAREILRDNQPTTSDDSAQRMNVD 321
Query: 459 NKLTEG 442
+K+ G
Sbjct: 322 SKIVPG 327
>U40938-4|AAK68283.1| 447|Caenorhabditis elegans Cyclophilin family
protein 8, isoformb protein.
Length = 447
Score = 27.9 bits (59), Expect = 8.9
Identities = 24/64 (37%), Positives = 34/64 (53%)
Frame = -3
Query: 579 REERQQMKVRRIEFRHLDFADRRSDSETLFDNRSSRREIRNKLTEGIRVGDVSRNRMAVR 400
REE++ + RR RH DRRS S + +R+ RR+ R+ R G V RN R
Sbjct: 230 REEKRDRR-RRSNDRH--GRDRRSRSRSQSRDRNRRRDDRSG-----RDGRVGRNERDDR 281
Query: 399 NGRN 388
+GR+
Sbjct: 282 SGRD 285
>U40938-3|AAA81696.1| 466|Caenorhabditis elegans Cyclophilin family
protein 8, isoforma protein.
Length = 466
Score = 27.9 bits (59), Expect = 8.9
Identities = 24/64 (37%), Positives = 34/64 (53%)
Frame = -3
Query: 579 REERQQMKVRRIEFRHLDFADRRSDSETLFDNRSSRREIRNKLTEGIRVGDVSRNRMAVR 400
REE++ + RR RH DRRS S + +R+ RR+ R+ R G V RN R
Sbjct: 230 REEKRDRR-RRSNDRH--GRDRRSRSRSQSRDRNRRRDDRSG-----RDGRVGRNERDDR 281
Query: 399 NGRN 388
+GR+
Sbjct: 282 SGRD 285
>U37429-7|AAA79351.2| 218|Caenorhabditis elegans Hypothetical
protein F09E5.11 protein.
Length = 218
Score = 27.9 bits (59), Expect = 8.9
Identities = 12/44 (27%), Positives = 24/44 (54%)
Frame = +2
Query: 77 NEEYVTLSIIFQILSFYNKLLISYSNLISFGIEVEDHQRVFIIF 208
++E +T + FY K ++SY +L++ ++ D VF+ F
Sbjct: 21 SKEKITPEVSKSCKEFYKKDVVSYKDLVNIKTKLPDGIPVFVFF 64
>U31078-1|AAC47130.1| 466|Caenorhabditis elegans cyclophilin
isoform 8 protein.
Length = 466
Score = 27.9 bits (59), Expect = 8.9
Identities = 24/64 (37%), Positives = 34/64 (53%)
Frame = -3
Query: 579 REERQQMKVRRIEFRHLDFADRRSDSETLFDNRSSRREIRNKLTEGIRVGDVSRNRMAVR 400
REE++ + RR RH DRRS S + +R+ RR+ R+ R G V RN R
Sbjct: 230 REEKRDRR-RRSNDRH--GRDRRSRSRSQSRDRNRRRDDRSG-----RDGRVGRNERDDR 281
Query: 399 NGRN 388
+GR+
Sbjct: 282 SGRD 285
>CU457740-2|CAM36332.1| 301|Caenorhabditis elegans Hypothetical
protein C50E10.2 protein.
Length = 301
Score = 27.9 bits (59), Expect = 8.9
Identities = 11/43 (25%), Positives = 22/43 (51%)
Frame = +2
Query: 5 YLTGKVYLE*SK*LNRDYTIIEISNEEYVTLSIIFQILSFYNK 133
+LT + E K DYT++ + + + + + + F + FY K
Sbjct: 122 FLTSSYFRENLKISTSDYTVVGVDSLDTIDICLNFMVTRFYKK 164
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,413,275
Number of Sequences: 27780
Number of extensions: 346904
Number of successful extensions: 910
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 881
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 910
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1935274832
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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