Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10e04r
         (794 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g19810.1 68417.m02905 glycosyl hydrolase family 18 protein si...    30   1.5  
At1g68200.1 68414.m07791 zinc finger (CCCH-type) family protein ...    30   1.5  
At4g19740.1 68417.m02898 glycosyl hydrolase family 18 protein si...    29   2.7  
At5g17260.1 68418.m02022 no apical meristem (NAM) family protein...    28   6.2  
At5g01370.1 68418.m00050 expressed protein                             28   6.2  
At5g53800.1 68418.m06685 expressed protein                             28   8.2  
At5g04360.1 68418.m00428 pullulanase, putative / starch debranch...    28   8.2  
At2g38570.1 68415.m04738 expressed protein ; expression supporte...    28   8.2  

>At4g19810.1 68417.m02905 glycosyl hydrolase family 18 protein
           similar to chitinase/lysozyme GI:467689 from [Nicotiana
           tabacum]
          Length = 379

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 18/58 (31%), Positives = 27/58 (46%)
 Frame = +1

Query: 349 PGMSFGISTAEEIIPTVSDRHSIT*YVPDTNTFSKLISNLTSRTAIIKESFRIAPTIG 522
           P  S    T +   P+V    SI   + D   ++ + SN TSR + I  S R+A + G
Sbjct: 74  PKFSTFTQTVQRRNPSVKTLLSIGGGIADKTAYASMASNPTSRKSFIDSSIRVARSYG 131


>At1g68200.1 68414.m07791 zinc finger (CCCH-type) family protein
           contains Pfam domain, PF00642: Zinc finger
           C-x8-C-x5-C-x3-H type (and similar)
          Length = 308

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 1/72 (1%)
 Frame = -3

Query: 513 RSDSETLFDNRSSRREIRNKLTEGIRVGDV-SRNRMAVRNGRNYFFSGGDSETHSRERST 337
           RS  +  FD+RS  R + N    G    +V ++NR   R+  N        E     RS+
Sbjct: 91  RSSIQNRFDHRSPLRMLSNLSIGGNDADEVENQNRTVNRDDVNDKSPTSVMENEDLNRSS 150

Query: 336 IQKEIPIETNAY 301
           + K I + +N Y
Sbjct: 151 LPKSISVRSNGY 162


>At4g19740.1 68417.m02898 glycosyl hydrolase family 18 protein
           similar to chitinase, class V GI:899342 from [Nicotiana
           tabacum]
          Length = 289

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 12/28 (42%), Positives = 20/28 (71%)
 Frame = +1

Query: 439 NTFSKLISNLTSRTAIIKESFRIAPTIG 522
           +TF++++SN TSR + I  S  IA ++G
Sbjct: 74  STFTEIVSNRTSRESFISSSISIARSLG 101


>At5g17260.1 68418.m02022 no apical meristem (NAM) family protein
           contains Pfam PF02365: No apical meristem (NAM) domain;
          Length = 476

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = +1

Query: 139 NKLLQFNQFRHRSRGPPTRLHNFFIFLSIIVEHLHENSAQ 258
           N  +Q   F+H+   PP R+ N     S   + LH+NS Q
Sbjct: 253 NTEVQCEMFQHQMSLPPLRVENSQAQTSDFSKRLHQNSGQ 292


>At5g01370.1 68418.m00050 expressed protein 
          Length = 427

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 29/106 (27%), Positives = 47/106 (44%), Gaps = 1/106 (0%)
 Frame = -3

Query: 639 RREINSDETISKFI-PSRILSREERQQMKVRRIEFRHLDFADRRSDSETLFDNRSSRREI 463
           R ++N  + +  F+ PS+  S  E+  +       R  +F  + S+S     N S    +
Sbjct: 240 RNDVNGAKKVRWFLSPSKSKSSSEKTALLGESKNIRADEFIGKESESPENKSNASPVSVL 299

Query: 462 RNKLTEGIRVGDVSRNRMAVRNGRNYFFSGGDSETHSRERSTIQKE 325
              L + + + D            +Y+FSGGDSE+ S E ST Q E
Sbjct: 300 DRDLYDYLILDD------------DYYFSGGDSESAS-ELSTKQVE 332


>At5g53800.1 68418.m06685 expressed protein
          Length = 351

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 25/87 (28%), Positives = 38/87 (43%), Gaps = 1/87 (1%)
 Frame = -3

Query: 582 SREERQQMKVRRIEFRHLDFADRRSDSETLFDNRSSRREIR-NKLTEGIRVGDVSRNRMA 406
           S EE+   + R  + R  D  D  S+S     + S + E R ++   G R  D   +R  
Sbjct: 38  SGEEKDVSRRRESKRRTKDGNDSGSESGLESGSESEKEERRRSRKDRGKRKSDRKSSRSR 97

Query: 405 VRNGRNYFFSGGDSETHSRERSTIQKE 325
            R  R+Y  S  DSE+ S    +  +E
Sbjct: 98  -RRRRDYSSSSSDSESESESEYSDSEE 123


>At5g04360.1 68418.m00428 pullulanase, putative / starch debranching
           enzyme, putative similar to pullulanase [Spinacia
           oleracea] GI:634093 (EC 3.2.1.41); contains Pfam
           profiles PF00128: Alpha amylase catalytic domain,
           PF02922: Isoamylase N-terminal domain
          Length = 965

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 13/47 (27%), Positives = 26/47 (55%)
 Frame = -3

Query: 507 DSETLFDNRSSRREIRNKLTEGIRVGDVSRNRMAVRNGRNYFFSGGD 367
           D+ETLFD  S +  +   + E  R+  ++ + +A+  G  +F +G +
Sbjct: 721 DNETLFDIISLKTPMEISVDERCRINHLASSMIALSQGIPFFHAGDE 767


>At2g38570.1 68415.m04738 expressed protein ; expression supported
           by MPSS
          Length = 302

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = +2

Query: 548 RRTFICCLSSRLSIREGINFEIVSS 622
           R  FICCLSS LS  E +  + V S
Sbjct: 62  RDNFICCLSSSLSNEEDVVHQTVGS 86


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,141,388
Number of Sequences: 28952
Number of extensions: 310328
Number of successful extensions: 828
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 801
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 828
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1794809600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)