Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10e04f
         (611 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3A11.05c |kms1||meiotic spindle pole body protein Kms1|Schiz...    31   0.17 
SPBC365.07c |||TATA element modulatory factor homolog |Schizosac...    31   0.17 
SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit Smc6|Schizosac...    30   0.23 
SPBC106.12c |||THO complex subunit |Schizosaccharomyces pombe|ch...    30   0.30 
SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3 B...    28   0.93 
SPBC31E1.05 |gle1||RNA export factor Gle1 |Schizosaccharomyces p...    28   1.2  
SPBC336.12c |cdc10||MBF transcription factor complex subunit Cdc...    27   2.8  
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc...    27   2.8  
SPAC16A10.05c |dad1||DASH complex subunit Dad1|Schizosaccharomyc...    26   3.7  
SPCC962.05 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    26   3.7  
SPBP19A11.04c |mor2|cps12|morphogenesis protein Mor2|Schizosacch...    26   4.9  
SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein Rad50|Schizos...    26   4.9  
SPAC110.02 |pds5||cohesin-associated protein Pds5|Schizosaccharo...    26   4.9  
SPAC1142.04 |||Noc2p-Noc3p complex subunit Noc2 family |Schizosa...    25   6.5  
SPAC664.08c |||traub transciption factor family protein |Schizos...    25   8.6  

>SPAC3A11.05c |kms1||meiotic spindle pole body protein
           Kms1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 607

 Score = 30.7 bits (66), Expect = 0.17
 Identities = 42/181 (23%), Positives = 84/181 (46%), Gaps = 10/181 (5%)
 Frame = +3

Query: 99  FVAILQPILSFTERSLVNGRQECCGRQPPALLQQSKRSLDGTHANIREISENRSLKDRAT 278
           FV IL+    F + + +N        + P + +      +G H  I++I+E + + D+A 
Sbjct: 152 FVNILRT--PFAQSTPLNRNTSSRNTEMPLVRKDKPDFSNGHHDLIKQITELQDMLDKAR 209

Query: 279 THIRDIRRY--IVQNR-NQLNRQL-VEDFRNNRSK--QNTRQFSVDSLVRAELRVERHRQ 440
              R   R   I++ + N+L  QL + D + N SK   N++   + +L    L + +   
Sbjct: 210 DQARKKSRTVDILEGKVNELTHQLNMADSKYNESKVANNSQNNQIKTLKAQNLNIHK--- 266

Query: 441 RSNGINDRRVLREVTERDVRFYRSIERNNKNLEVRRETVSKSL----QQYETDNVAASRT 608
                N +++  E+ + +   Y S ++    L+VR  T+ +      ++ E  ++AASR+
Sbjct: 267 -----NFQKIQSELIQTNSGLY-STKKELSALQVRYATLLRKFTDQTKKIEELSLAASRS 320

Query: 609 S 611
           S
Sbjct: 321 S 321


>SPBC365.07c |||TATA element modulatory factor homolog
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 547

 Score = 30.7 bits (66), Expect = 0.17
 Identities = 24/136 (17%), Positives = 52/136 (38%), Gaps = 8/136 (5%)
 Frame = +3

Query: 192 LQQSKRSLDGTHANIREISENRSLKDRATTHIRDIRRYIVQNRNQLNRQLV------EDF 353
           ++Q K+SL      ++ + E ++  +   +  +++   +   ++Q  +++       ED 
Sbjct: 66  IKQLKKSLSEAETKLKRLDEKQATPELQVSDSKEMEEQLELQKSQFEKRISILEKEKEDL 125

Query: 354 RNNRSKQNTRQFSVDSLVRA--ELRVERHRQRSNGINDRRVLREVTERDVRFYRSIERNN 527
           +    +       V  L R    L  +   QRS  + +    ++  +     Y   E   
Sbjct: 126 QRKMEELTVESMEVVRLTRQVETLSTQYSIQRSQWVREDEKKKKEIQDLKELYEKSEHGA 185

Query: 528 KNLEVRRETVSKSLQQ 575
           KN E  RET    + Q
Sbjct: 186 KNWERERETFQNQVSQ 201


>SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit
            Smc6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1140

 Score = 30.3 bits (65), Expect = 0.23
 Identities = 27/133 (20%), Positives = 49/133 (36%)
 Frame = +3

Query: 192  LQQSKRSLDGTHANIREISENRSLKDRATTHIRDIRRYIVQNRNQLNRQLVEDFRNNRSK 371
            +Q  +R +  T   +   +            IRD +R +++       ++  + +   S 
Sbjct: 787  IQTLERRISETEKELESYAGQLQDAKNEEHRIRDNQRPVIEEIRIYREKIQTETQRLSSL 846

Query: 372  QNTRQFSVDSLVRAELRVERHRQRSNGINDRRVLREVTERDVRFYRSIERNNKNLEVRRE 551
            Q       D    +E+ +ERHRQ      +  +LRE   + V+  + +         R E
Sbjct: 847  QTELSRLRDEKRNSEVDIERHRQTVESCTN--ILREKEAKKVQCAQVVADYTAKANTRCE 904

Query: 552  TVSKSLQQYETDN 590
             V   L   E DN
Sbjct: 905  RVPVQLSPAELDN 917


>SPBC106.12c |||THO complex subunit |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 274

 Score = 29.9 bits (64), Expect = 0.30
 Identities = 16/59 (27%), Positives = 26/59 (44%)
 Frame = +3

Query: 435 RQRSNGINDRRVLREVTERDVRFYRSIERNNKNLEVRRETVSKSLQQYETDNVAASRTS 611
           R+ S      R     +++D R +RS  + + N  +  E + K L +Y     AAS  S
Sbjct: 176 RKPSRSSRSNRGFNRSSKKDDRSFRSSSKKSSNNSISHEDLDKELDEYAMSFHAASTVS 234


>SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3
           Brl1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 692

 Score = 28.3 bits (60), Expect = 0.93
 Identities = 38/144 (26%), Positives = 59/144 (40%)
 Frame = +3

Query: 48  QNTEHTVTMHNWRLLLAFVAILQPILSFTERSLVNGRQECCGRQPPALLQQSKRSLDGTH 227
           Q   H  +M N+R     +A+L+  LSF   +L +   E    Q   L   S+RS++   
Sbjct: 156 QRQVHFTSMINYRTSQLKLALLKRKLSFFREALNSAELEWKRVQQDQLTSASERSIENIA 215

Query: 228 ANIREISENRSLKDRATTHIRDIRRYIVQNRNQLNRQLVEDFRNNRSKQNTRQFSVDSLV 407
            +I   SE +++ +     + D    I + +N  N Q   D           + S  S  
Sbjct: 216 DDI-PASEPKAILENGEGCLND-NDNISKLKN--NFQSQADLMQANINSKLDELSQKSTR 271

Query: 408 RAELRVERHRQRSNGINDRRVLRE 479
            A+L V+       GI D RV RE
Sbjct: 272 AAQLYVD-----IMGITDERVSRE 290


>SPBC31E1.05 |gle1||RNA export factor Gle1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 480

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 23/83 (27%), Positives = 38/83 (45%), Gaps = 3/83 (3%)
 Frame = +3

Query: 309 VQNRNQLNRQLVEDFRNNRSKQNTRQFSVDSLVRAELRVERHRQRSNGINDRR--VLREV 482
           V+ +N + + + E  R    KQ   Q   +  +  + R+E  RQR     +RR   L E 
Sbjct: 85  VEEQNLIEQSITESQRIFSEKQRLEQERFNRELLEKKRIEAERQRLKDEEERRKKELMEK 144

Query: 483 TERDVRFYRSI-ERNNKNLEVRR 548
            +++    R I E+ +K  E RR
Sbjct: 145 EKKEKERIRLIEEQKHKENEQRR 167


>SPBC336.12c |cdc10||MBF transcription factor complex subunit
           Cdc10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 767

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 25/113 (22%), Positives = 48/113 (42%), Gaps = 2/113 (1%)
 Frame = +3

Query: 204 KRSLDGTHANIREISENRSLKDRATTHIRDIRRYIVQNRNQLNRQLVEDFRNN-RSKQNT 380
           K+  D     +  +SEN S K++     R   R I+ +   +   L +DF++   +KQ+ 
Sbjct: 532 KQPEDSKQTKVSLMSENLSSKEKTAVPPRQKSRDIIASVTDVISSLDKDFQDEMAAKQSM 591

Query: 381 RQFSVDSLVRAELRVERHRQRSNGINDRRVL-REVTERDVRFYRSIERNNKNL 536
              +   L  +  ++   R++ +    +R L  E+ +R      SIE     L
Sbjct: 592 IDSAYTQLRESTKKLSDLREQLHVSETQRTLFLELRQRCKNLMTSIEEQKSEL 644


>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 503

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 12/48 (25%), Positives = 25/48 (52%)
 Frame = +1

Query: 55  QSIQLLCITGVYYWRLSRYFSLFCRSQNEVLLMDDKSVVVGNHQLYFN 198
           ++ Q++  +  +  R+ +Y   F  + NE+ L  ++  V G  QLY +
Sbjct: 285 RNTQIVLFSATFSERVEKYAERFAPNANEIRLKTEELSVEGIKQLYMD 332


>SPAC16A10.05c |dad1||DASH complex subunit Dad1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 85

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 16/52 (30%), Positives = 25/52 (48%)
 Frame = +1

Query: 430 DIDKGRMELMIDAY*GKSQNEM*DFTEALNVITKILKFAGKPFLNLYNNMKQ 585
           DID  R   ++     KS NE+ +   ALN   + +   GK F N+ +  K+
Sbjct: 17  DIDFERRRRLLTLQISKSMNEVVNLMSALNKNLESINGVGKEFENVASLWKE 68


>SPCC962.05 |||sequence orphan|Schizosaccharomyces pombe|chr
          3|||Manual
          Length = 536

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = -1

Query: 83 PVMHSNCMLCVLGFSFAMWYW 21
          P +  NC L + G SFA W W
Sbjct: 23 PEVPLNCSLVIDGPSFAFWLW 43


>SPBP19A11.04c |mor2|cps12|morphogenesis protein
           Mor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2196

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = -2

Query: 475 LNTRRSLIP-FDLCRCLSTLSSALTRESTENWRVFCLL 365
           +N RRS I  + LCR L+ ++  +   + E   V CLL
Sbjct: 126 VNERRSSISIYILCRVLTEIAETIPSNALEESTVSCLL 163


>SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein
           Rad50|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1290

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 25/130 (19%), Positives = 56/130 (43%), Gaps = 2/130 (1%)
 Frame = +3

Query: 189 LLQQSKRSLDGTHANIRE-ISENRSLKDRATTHIRDIRRYIVQNRNQLNRQLVEDFRNNR 365
           +  +S   L+  H+N  E + E + L         D+   ++++R +L  +L  D    +
Sbjct: 293 ITDESSEDLEKLHSNFAEKVKEEQELYKSLEKKRSDLES-LLKSRRELLEKLTGDLGKIQ 351

Query: 366 SK-QNTRQFSVDSLVRAELRVERHRQRSNGINDRRVLREVTERDVRFYRSIERNNKNLEV 542
            + ++  +  V         V  HR   N IN+  ++ EV++      ++ E ++  L+ 
Sbjct: 352 GEIESLEKLKVKKSTMINEIV--HRYNINEINEEGIMTEVSKYASLVNKNYEISSGKLKE 409

Query: 543 RRETVSKSLQ 572
           R+  V   ++
Sbjct: 410 RQVAVRARIE 419


>SPAC110.02 |pds5||cohesin-associated protein
           Pds5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1205

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 25/103 (24%), Positives = 44/103 (42%), Gaps = 4/103 (3%)
 Frame = +1

Query: 67  LLCITGVYYWRLSRYFSLFCRSQNEVLLMDDKSVVVGNHQLYFNKASGL*MVPTL---TF 237
           LL    V Y  L  Y+   C++ N  ++ +D+  +    +   +  S     PTL   TF
Sbjct: 503 LLLQRQVKYSELLNYYIECCKNYNGGVMDNDEESITNKLKKVIDIISSKSSNPTLTEATF 562

Query: 238 EKYPKIVH*RIERQLTYVTSVVISYRIETN*IDSLLK-TSETI 363
            K+ ++   +  + L    S+   Y++    I  L K  SET+
Sbjct: 563 RKFAELNDRQSYKMLLQTFSIKSEYQVVLKSIKYLFKRVSETL 605


>SPAC1142.04 |||Noc2p-Noc3p complex subunit Noc2 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 707

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 15/61 (24%), Positives = 32/61 (52%)
 Frame = +3

Query: 354 RNNRSKQNTRQFSVDSLVRAELRVERHRQRSNGINDRRVLREVTERDVRFYRSIERNNKN 533
           R N   +NT+  + +S    E  +E ++++  G+          E+D  FY+ +E+N+++
Sbjct: 96  RKNLPNENTQDSTSESSEEEEDGLESYQKQLEGLK---------EKDPEFYKFLEQNDQD 146

Query: 534 L 536
           L
Sbjct: 147 L 147


>SPAC664.08c |||traub transciption factor family protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 452

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 14/70 (20%), Positives = 31/70 (44%)
 Frame = +3

Query: 309 VQNRNQLNRQLVEDFRNNRSKQNTRQFSVDSLVRAELRVERHRQRSNGINDRRVLREVTE 488
           + N     + L++DF N+R   +TR  +V  +   + + ++    +     R++   V +
Sbjct: 330 IYNDTDFYQSLLKDFINSRMADSTRDGTVRWMATKKQKQKKENVDTKASKGRKIRYHVHD 389

Query: 489 RDVRFYRSIE 518
           +   F   IE
Sbjct: 390 KLQNFMAPIE 399


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,476,773
Number of Sequences: 5004
Number of extensions: 49426
Number of successful extensions: 189
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 179
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 189
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 267622334
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)