Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10e04f
(611 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0695 + 18790491-18790565,18791299-18791427,18792981-18794189 32 0.41
02_01_0598 + 4440018-4440070,4440627-4440693,4440794-4440926,444... 31 0.95
12_01_0410 - 3234836-3234958,3235636-3235776,3235899-3235949,323... 30 1.7
09_06_0145 + 21162308-21163666 29 2.2
06_03_0551 - 22027441-22028224,22029015-22029344,22029510-220297... 29 2.9
11_04_0099 + 13461311-13461612,13461685-13461800,13463296-13463408 29 3.8
03_02_0961 + 12759701-12760054,12760294-12760420,12760719-127611... 29 3.8
01_06_0481 - 29646245-29646371,29646474-29646556,29646672-296467... 29 3.8
03_05_1096 - 30364144-30365310,30365825-30365971,30366087-303663... 28 5.1
01_06_0213 + 27580635-27581105,27581206-27581298,27581376-275815... 28 5.1
03_05_0991 + 29522483-29522614,29523091-29523159,29523369-295234... 27 8.9
>04_03_0695 + 18790491-18790565,18791299-18791427,18792981-18794189
Length = 470
Score = 31.9 bits (69), Expect = 0.41
Identities = 23/76 (30%), Positives = 40/76 (52%), Gaps = 2/76 (2%)
Frame = +3
Query: 243 ISENRSLKDRATTHIRD-IRRYIVQNRNQLNRQLVEDFRNNRSKQNTRQFSVDSLVRAEL 419
IS RS D A +H+R I+ + L +QLV++ + +SKQ + + + +EL
Sbjct: 122 ISALRSEIDLARSHVRKLIKEQKSEGIESLKKQLVQEMESWKSKQKEKVANALQYIVSEL 181
Query: 420 RVE-RHRQRSNGINDR 464
E + R+R+ IN +
Sbjct: 182 DSEKKSRRRAERINKK 197
>02_01_0598 + 4440018-4440070,4440627-4440693,4440794-4440926,
4441075-4441120,4442470-4442521,4442601-4442753,
4443338-4443457,4443549-4443714,4443822-4443934,
4444049-4444120,4444992-4445213,4445270-4445317,
4445639-4445697,4445809-4445887,4445982-4446119,
4446327-4446551,4446643-4447430,4447548-4447723,
4447911-4448169,4448646-4448707,4451055-4451212,
4451618-4451743,4452197-4452260,4452386-4452494,
4452607-4452760,4453055-4453178,4453257-4453333,
4453442-4453494,4453673-4453727,4453833-4454021
Length = 1379
Score = 30.7 bits (66), Expect = 0.95
Identities = 38/146 (26%), Positives = 58/146 (39%), Gaps = 4/146 (2%)
Frame = +3
Query: 75 HNWRLLLAFVAILQPILSFTERSLVNGRQ--ECCGRQPPALLQQSKRSLDGTHANIREIS 248
H +L +A++Q S E+ L N + + L + S AN R S
Sbjct: 844 HRKKLRQIEIAVMQYRESLEEKGLRNTEEIEKKVASHRRRLQSEYGLSFSNDGANSRRSS 903
Query: 249 ENRSL--KDRATTHIRDIRRYIVQNRNQLNRQLVEDFRNNRSKQNTRQFSVDSLVRAELR 422
E S +DR R R + ++R+ R L D +NR++ R D+ R R
Sbjct: 904 ERTSSERRDRHDDSSRKRHRSLSRSRSPPRRSLERDREHNRNRDTDRSHGNDA-GRERDR 962
Query: 423 VERHRQRSNGINDRRVLREVTERDVR 500
V R + S G +D E+D R
Sbjct: 963 V-REKSASRGRDDHYDRSRDREKDRR 987
>12_01_0410 -
3234836-3234958,3235636-3235776,3235899-3235949,
3236045-3236125,3236427-3236483,3236898-3236993,
3237204-3237379,3237630-3237703,3237909-3238016,
3238100-3238236,3238396-3238446,3239032-3239142,
3239291-3239363,3240322-3240398,3240641-3240706,
3241349-3241463,3242255-3242511
Length = 597
Score = 29.9 bits (64), Expect = 1.7
Identities = 17/42 (40%), Positives = 22/42 (52%)
Frame = +1
Query: 79 TGVYYWRLSRYFSLFCRSQNEVLLMDDKSVVVGNHQLYFNKA 204
TG Y W +F C S E + D + +V+ NHQ Y NKA
Sbjct: 438 TGTYRWMAPEHFFSPC-SLGERMNWDKEEIVI-NHQPYDNKA 477
>09_06_0145 + 21162308-21163666
Length = 452
Score = 29.5 bits (63), Expect = 2.2
Identities = 14/42 (33%), Positives = 22/42 (52%)
Frame = +3
Query: 36 KGKPQNTEHTVTMHNWRLLLAFVAILQPILSFTERSLVNGRQ 161
+G+P + T+ H WR + + P+ S T R V+GRQ
Sbjct: 263 RGRPFSRFETILAHVWRTMTRARGLGNPLQSSTIRISVDGRQ 304
>06_03_0551 -
22027441-22028224,22029015-22029344,22029510-22029778,
22030530-22031453,22037761-22038360,22040049-22040267
Length = 1041
Score = 29.1 bits (62), Expect = 2.9
Identities = 16/55 (29%), Positives = 27/55 (49%)
Frame = +3
Query: 306 IVQNRNQLNRQLVEDFRNNRSKQNTRQFSVDSLVRAELRVERHRQRSNGINDRRV 470
++ N+ L +L NN S++ T Q S+ R + V+ RS G+ RR+
Sbjct: 530 VLLNKKDLLEELESQNNNNLSEEKTLQNIKHSMSRDDPNVKAILSRSGGLPQRRI 584
>11_04_0099 + 13461311-13461612,13461685-13461800,13463296-13463408
Length = 176
Score = 28.7 bits (61), Expect = 3.8
Identities = 14/40 (35%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
Frame = +3
Query: 273 ATTHIRD-IRRYIVQNRNQLNRQLVEDFRNNRSKQNTRQF 389
+T+H R R+Y+ +NR + +R+LVED+ + + +QF
Sbjct: 59 STSHPRSGERKYVKRNREEGHRRLVEDYFSKDPIYSDKQF 98
>03_02_0961 +
12759701-12760054,12760294-12760420,12760719-12761167,
12761369-12761590,12761672-12761980,12762092-12762430,
12762504-12762584,12762661-12762756,12762846-12763220,
12763400-12763531,12763962-12764132
Length = 884
Score = 28.7 bits (61), Expect = 3.8
Identities = 19/94 (20%), Positives = 41/94 (43%)
Frame = +3
Query: 318 RNQLNRQLVEDFRNNRSKQNTRQFSVDSLVRAELRVERHRQRSNGINDRRVLREVTERDV 497
RN+ +Q+ E R+ + + V L ++ +E R+R N + R L E
Sbjct: 278 RNEFEKQMAEIMRSTEMMEAHKNDGVKILELNKIDMEDVRERQNRLAKMRSLLFRHEMKA 337
Query: 498 RFYRSIERNNKNLEVRRETVSKSLQQYETDNVAA 599
+ + I+ + ++++ + + +E D AA
Sbjct: 338 KRIKKIKSRTYHRMLKKDKLKAASADFEADPEAA 371
>01_06_0481 - 29646245-29646371,29646474-29646556,29646672-29646752,
29646843-29646899,29647007-29647094,29647304-29647374,
29647457-29647585,29647662-29648051,29648332-29648517,
29648612-29648692,29648787-29648879,29648966-29649086,
29649200-29649409,29649560-29649727,29649898-29650065,
29650144-29650311,29650453-29650620,29650738-29650905,
29651023-29651190,29651567-29651734,29652391-29652558,
29652645-29652812,29655720-29655887,29656069-29656236,
29656391-29656558,29656670-29656837,29657525-29657664,
29658033-29658221,29658243-29658315,29658379-29658452,
29658535-29658654,29658718-29658738,29658794-29658999,
29659094-29659271,29660066-29660126,29660232-29660341,
29660427-29660558,29661091-29661258,29661339-29661465,
29661794-29661831,29663321-29663422,29663505-29663562,
29663659-29663760,29663844-29663990,29664098-29664234,
29664313-29664462,29664561-29664720,29665820-29665878,
29666025-29666181,29666288-29666433,29666523-29666666,
29667242-29667376
Length = 2344
Score = 28.7 bits (61), Expect = 3.8
Identities = 18/77 (23%), Positives = 33/77 (42%), Gaps = 2/77 (2%)
Frame = +3
Query: 339 LVEDFRNNRSKQNTRQFSVDSLVRAELRVERH--RQRSNGINDRRVLREVTERDVRFYRS 512
L+E+ + K + Q +++ L + +R ++ E E + + YR
Sbjct: 1361 LLEEISSANKKTDLLQKTIERLEEGATTTDALYLTERQEHDQTKKAFSEAQEINQQLYRK 1420
Query: 513 IERNNKNLEVRRETVSK 563
IE KN+E RE V +
Sbjct: 1421 IEEAEKNIEQLRENVER 1437
>03_05_1096 - 30364144-30365310,30365825-30365971,30366087-30366393,
30366541-30366849,30367544-30370567,30370640-30372290,
30372373-30373463,30373544-30373646,30373737-30374439,
30374654-30375783,30375913-30376027,30376504-30376695,
30377443-30377616,30378438-30378494,30378581-30378716,
30378842-30378927,30379023-30379092,30379993-30380021,
30380444-30380456,30380762-30381006
Length = 3582
Score = 28.3 bits (60), Expect = 5.1
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = +3
Query: 465 RVLREVTERDVRFYRSIERNNKNLEVRRETVSKSLQQYETD 587
R LRE+ + D R + I NL++ R+ +S L+ D
Sbjct: 2512 RKLREIAKLDSRHWEQINERRYNLDLVRDVMSTELRAIRQD 2552
>01_06_0213 +
27580635-27581105,27581206-27581298,27581376-27581540,
27581640-27581862,27582329-27582429,27582666-27582713,
27583086-27583172,27583745-27583879,27583985-27584140,
27585336-27585545,27585641-27586351,27586429-27586974,
27587872-27588495,27588595-27588699,27590460-27590711,
27590939-27591766
Length = 1584
Score = 28.3 bits (60), Expect = 5.1
Identities = 23/96 (23%), Positives = 44/96 (45%)
Frame = +3
Query: 195 QQSKRSLDGTHANIREISENRSLKDRATTHIRDIRRYIVQNRNQLNRQLVEDFRNNRSKQ 374
+Q ++ ++ H R E R L++R R+ R++ + R + R +E F +S++
Sbjct: 191 EQMRKEME-RHDRERRKEEERLLRERQ----REQERFLREQRREHER--MEKFMQKQSRR 243
Query: 375 NTRQFSVDSLVRAELRVERHRQRSNGINDRRVLREV 482
+Q + ELR E+ R N+R R +
Sbjct: 244 AEKQRQ-----KEELRKEKEAARQKAANERATARRI 274
>03_05_0991 +
29522483-29522614,29523091-29523159,29523369-29523410,
29524409-29524540,29524832-29525023,29525134-29525166
Length = 199
Score = 27.5 bits (58), Expect = 8.9
Identities = 20/85 (23%), Positives = 39/85 (45%), Gaps = 2/85 (2%)
Frame = +3
Query: 285 IRDIRRYIVQNRNQLNRQLVEDFRNNRSKQNTRQFSVDSLVRAELRVER-HRQRSNGIND 461
+ +RR + +Q N+ +RN + N FS D+ R R+++ + + +
Sbjct: 68 VAQVRRSVDWVYSQFNKMQTTSWRNASNSSNRGSFSEDARRRYYQRMQQEYEEEQERVQR 127
Query: 462 RRVLREVTERD-VRFYRSIERNNKN 533
R ++ V R+ +F RS E +N
Sbjct: 128 IRHMQSVFNRERNKFRRSYEAWREN 152
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,143,144
Number of Sequences: 37544
Number of extensions: 283387
Number of successful extensions: 872
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 852
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 872
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1466594128
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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