Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10e04f
         (611 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g25840.1 68416.m03219 protein kinase family protein contains ...    33   0.15 
At3g15920.1 68416.m02013 phox (PX) domain-containing protein wea...    32   0.34 
At4g36210.1 68417.m05151 expressed protein contains Pfam PF05277...    31   0.80 
At3g04990.1 68416.m00542 hypothetical protein                          29   2.4  
At4g08810.1 68417.m01450 expressed protein                             28   4.2  
At2g40620.1 68415.m05010 bZIP transcription factor family protei...    28   4.2  
At2g04850.1 68415.m00500 auxin-responsive protein-related relate...    28   4.2  
At3g18480.1 68416.m02348 CCAAT displacement protein-related / CD...    28   5.6  
At2g18540.1 68415.m02160 cupin family protein contains Pfam prof...    28   5.6  
At1g44900.1 68414.m05144 DNA replication licensing factor, putat...    28   5.6  
At2g35540.1 68415.m04353 DNAJ heat shock N-terminal domain-conta...    27   7.4  
At5g67320.1 68418.m08490 WD-40 repeat family protein strong simi...    27   9.8  
At5g46770.1 68418.m05761 expressed protein                             27   9.8  
At4g35870.1 68417.m05094 expressed protein                             27   9.8  

>At3g25840.1 68416.m03219 protein kinase family protein contains
           Pfam profile: PF00069 eukaryotic protein kinase domain
          Length = 935

 Score = 33.1 bits (72), Expect = 0.15
 Identities = 32/108 (29%), Positives = 50/108 (46%), Gaps = 1/108 (0%)
 Frame = +3

Query: 201 SKRSLDGTHANIREISENRSLKDRATTHIRDIRRYIVQNRNQLNRQLVEDF-RNNRSKQN 377
           SK S D   ++    +  +S + RA +  +   R    +R++       D  R++ S ++
Sbjct: 161 SKLSYDNGRSSFSPSNSRQSNEGRARSRSKSHDRERETSRSRFAEDEFSDRGRHHDSSRD 220

Query: 378 TRQFSVDSLVRAELRVERHRQRSNGINDRRVLREVTERDVRFYRSIER 521
                VDS VR E R   HR+     NDR+  REV ERD    R ++R
Sbjct: 221 YHHDRVDS-VRTEERY--HRRGRYEENDRQYSREVLERDRSKERDMDR 265


>At3g15920.1 68416.m02013 phox (PX) domain-containing protein weak
           similarity to myosin heavy chain [Rana catesbeiana]
           GI:4249699; contains Pfam profile PF00787: PX domain
          Length = 755

 Score = 31.9 bits (69), Expect = 0.34
 Identities = 27/109 (24%), Positives = 46/109 (42%), Gaps = 3/109 (2%)
 Frame = +3

Query: 258 SLKDRATTHIRDIRRYIVQNRNQLNRQLVEDFRNNRSKQNTRQFSVDSLVRAELRV---E 428
           S+KD  T HI      +VQ  NQ+  Q + D R N    +     ++   +AEL+V   E
Sbjct: 514 SIKDEKT-HIETANESLVQE-NQMLLQQINDIRENFENFHKEHEELEVKAKAELKVLVKE 571

Query: 429 RHRQRSNGINDRRVLREVTERDVRFYRSIERNNKNLEVRRETVSKSLQQ 575
               R+   + R+ L  + +  +   R ++R     E  +    K L +
Sbjct: 572 VKSLRTTQSDLRQELSGIMKEKLEMERIVQREKDREETAKNADKKLLHE 620


>At4g36210.1 68417.m05151 expressed protein contains Pfam PF05277:
           Protein of unknown function (DUF726)
          Length = 672

 Score = 30.7 bits (66), Expect = 0.80
 Identities = 19/101 (18%), Positives = 39/101 (38%)
 Frame = +3

Query: 249 ENRSLKDRATTHIRDIRRYIVQNRNQLNRQLVEDFRNNRSKQNTRQFSVDSLVRAELRVE 428
           E  +    A  HI    R + +  N  + ++VE         +    S+   V  + + E
Sbjct: 93  EQTACSSPAKHHIGAFTRLLSEEANDASAEMVEQEMALAKAADAMVHSIQCSVSIDAKKE 152

Query: 429 RHRQRSNGINDRRVLREVTERDVRFYRSIERNNKNLEVRRE 551
           +H++  N   ++  + EV  +DV   +  ++        RE
Sbjct: 153 KHQEYENECREKYAVPEVKSKDVDLDKEKDKKEAAESAARE 193


>At3g04990.1 68416.m00542 hypothetical protein
          Length = 227

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 28/130 (21%), Positives = 58/130 (44%)
 Frame = +3

Query: 174 RQPPALLQQSKRSLDGTHANIREISENRSLKDRATTHIRDIRRYIVQNRNQLNRQLVEDF 353
           R   A +++S R LD     ++ +S +   K    +H  +  +  V +  +L  +  E+ 
Sbjct: 26  RMGEANIEKSSRELDLKEKELQILSSDLEQK----SHAFEAEKSEVGDLKKLVEECTEEL 81

Query: 354 RNNRSKQNTRQFSVDSLVRAELRVERHRQRSNGINDRRVLREVTERDVRFYRSIERNNKN 533
           R   SK+N     +DSL+R +  +E        + D ++++ + E   R+  +     + 
Sbjct: 82  R---SKRNLLTVKLDSLIRVQRELE--------LKDNQLVQVMAELKRRYSEARHVQKRK 130

Query: 534 LEVRRETVSK 563
            E+  ET +K
Sbjct: 131 REMEDETATK 140


>At4g08810.1 68417.m01450 expressed protein
          Length = 552

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 15/43 (34%), Positives = 25/43 (58%)
 Frame = +1

Query: 127 RSQNEVLLMDDKSVVVGNHQLYFNKASGL*MVPTLTFEKYPKI 255
           RSQ +V L+DD S + GN   ++N+ S L     + F+ Y ++
Sbjct: 479 RSQYKVHLLDDYSYLWGNKSEWYNETSLLNNGKPVEFDGYMRV 521


>At2g40620.1 68415.m05010 bZIP transcription factor family protein
           identical to b-Zip DNA binding protein GI:2246376 from
           [Arabidopsis thaliana]; contains a bZIP transcription
           factor basic domain signature (PDOC00036)
          Length = 367

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 17/64 (26%), Positives = 28/64 (43%)
 Frame = +3

Query: 411 AELRVERHRQRSNGINDRRVLREVTERDVRFYRSIERNNKNLEVRRETVSKSLQQYETDN 590
           AEL V   ++    I +R+      ER  R+   +ER  + L+    T+S  L  ++ D 
Sbjct: 142 AELWVVDPKRAKRIIANRQSAARSKERKARYILELERKVQTLQTEATTLSAQLSLFQRDT 201

Query: 591 VAAS 602
              S
Sbjct: 202 TGLS 205


>At2g04850.1 68415.m00500 auxin-responsive protein-related related
           to auxin-induced protein AIR12 GI:11357190 [Arabidopsis
           thaliana]
          Length = 404

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 13/35 (37%), Positives = 14/35 (40%)
 Frame = -2

Query: 475 LNTRRSLIPFDLCRCLSTLSSALTRESTENWRVFC 371
           L   RS      C CLSTL          +W VFC
Sbjct: 346 LREGRSYAKLGYCLCLSTLVGVCVAMEVNSWVVFC 380


>At3g18480.1 68416.m02348 CCAAT displacement protein-related /
           CDP-related similar to CCAAT displacement protein (CDP)
           (Cut-like 1) (Swiss-Prot:P39880) [Homo sapiens];
           contains Pfam:PF00904 Involucrin repeat
          Length = 689

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 31/142 (21%), Positives = 63/142 (44%), Gaps = 15/142 (10%)
 Frame = +3

Query: 213 LDGTHANIREISE-NRSLKDRATTHIRD---IRRYIVQNRNQLNRQLVEDFRNNRSKQNT 380
           L    A IR + E NR L+ +    I++   I++  +   NQ   +L++D R    +   
Sbjct: 161 LKNQQATIRRLEERNRQLEQQMEEKIKEVVEIKQRNLAEENQKTMELLKD-REQALQDQL 219

Query: 381 RQF--SVDSLVRA---------ELRVERHRQRSNGINDRRVLREVTERDVRFYRSIERNN 527
           RQ   SV ++ +          ELR +   + +   ++  +L +  ER      ++ER  
Sbjct: 220 RQAKDSVSTMQKLHELAQNQLFELRAQSDEETAGKQSEVSLLMDEVERAQTRLLTLEREK 279

Query: 528 KNLEVRRETVSKSLQQYETDNV 593
            +L  + +T ++     ++DN+
Sbjct: 280 GHLRSQLQTANEDTDNKKSDNI 301


>At2g18540.1 68415.m02160 cupin family protein contains Pfam profile
           PF00190: Cupin
          Length = 707

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 28/131 (21%), Positives = 54/131 (41%), Gaps = 2/131 (1%)
 Frame = +3

Query: 195 QQSKRSLDGTHANIREISENRSLKDRATTHIRDIRRYIVQNRNQLNRQLVEDFRNNRSKQ 374
           ++ KR  +   A  RE  E R  ++       + R+   + R ++ R+  E+    R ++
Sbjct: 505 ERKKREEEAEQARKRE--EEREKEEEMAKKREEERQR--KEREEVERKRREEQERKRREE 560

Query: 375 NTRQFSVDSLVRAEL--RVERHRQRSNGINDRRVLREVTERDVRFYRSIERNNKNLEVRR 548
             R+   +     E+  R E+ RQR       R +RE  ER      +  R  +  +  R
Sbjct: 561 EARKREEERKREEEMAKRREQERQRKEREEVERKIREEQERKREEEMAKRREQERQKKER 620

Query: 549 ETVSKSLQQYE 581
           E + +  ++ E
Sbjct: 621 EEMERKKREEE 631


>At1g44900.1 68414.m05144 DNA replication licensing factor, putative
            similar to DNA replication licensing factor MCM2 from
            {Xenopus laevis} SP|P55861, SP|P49736 {Homo sapiens};
            contains Pfam profile PF00493: MCM2/3/5 family
          Length = 928

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 34/144 (23%), Positives = 63/144 (43%), Gaps = 11/144 (7%)
 Frame = +3

Query: 183  PALLQQSKRSLDGTHANIREISENRSLKDRATTHIRD-IRRYIVQNRNQLNRQLVEDFRN 359
            P L +   + L+  +AN+R  S N      AT H+   IR      R  L + + E+  N
Sbjct: 750  PKLGELDAKKLETVYANLRRESMNGQGVSIATRHLESMIRMSEAHARMHLRQYVTEEDVN 809

Query: 360  NR------SKQNTRQFSVDSLVRAEL-RVERHRQRSNGINDRRVLREVTERDVRFYRSIE 518
                    S  +T++F V   +R    R   +++  N +    +L+E+ +  ++F   I 
Sbjct: 810  MAIRVLLDSFISTQKFGVQRTLRESFKRYITYKKDFNSLL-LVLLKELVKNALKFEEIIS 868

Query: 519  RNNKNL---EVRRETVSKSLQQYE 581
             +N  L   EV+ E +    ++Y+
Sbjct: 869  GSNSGLPTIEVKIEELQTKAKEYD 892


>At2g35540.1 68415.m04353 DNAJ heat shock N-terminal
           domain-containing protein contains Pfam profile PF00226:
           DnaJ domain
          Length = 575

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 16/74 (21%), Positives = 34/74 (45%)
 Frame = +3

Query: 354 RNNRSKQNTRQFSVDSLVRAELRVERHRQRSNGINDRRVLREVTERDVRFYRSIERNNKN 533
           + N+SK N++    DS     +  E  ++     +    LRE++   V   + + +N KN
Sbjct: 251 KRNKSKVNSKITEKDSSGEENMGRETQKRSLADASMTETLREMSTNAVNNKQEVLKNRKN 310

Query: 534 LEVRRETVSKSLQQ 575
           ++ ++    K L +
Sbjct: 311 IKKKKMANHKDLTE 324


>At5g67320.1 68418.m08490 WD-40 repeat family protein strong
           similarity to unknown protein (ref|NP_005638.1)
          Length = 613

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 26/123 (21%), Positives = 50/123 (40%), Gaps = 2/123 (1%)
 Frame = +3

Query: 213 LDGTHANIREISENRSLKDRATTHIRDIRRYIVQNRNQLNRQLVEDFRNNRSKQNTRQFS 392
           LD    +++E+ +    K R    +   R    +N   + R+   D    + K    +  
Sbjct: 84  LDLISKDVKELQDMLREKKRKERDMEKERDRSKENDKGVEREHEGDRNRAKEKDRHEKQK 143

Query: 393 VDSLVRAELRVERHRQRSNGINDRRVLREVTERDVRFYRSIER--NNKNLEVRRETVSKS 566
                R +L  E+ R+R     ++   RE  ER++ F R  +R    K  E+ RE   + 
Sbjct: 144 EREREREKLEREKEREREKIEREKEREREKMEREI-FEREKDRLKLEKEREIEREREREK 202

Query: 567 LQQ 575
           +++
Sbjct: 203 IER 205


>At5g46770.1 68418.m05761 expressed protein
          Length = 133

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = +1

Query: 517 NVITKILKFAGKPFLNLYNNMKQIMWLHHVR 609
           N+  +I +  G+P  +L + MK++  +HHVR
Sbjct: 53  NLSPRIYEKIGRPGSSLAHKMKKVKKIHHVR 83


>At4g35870.1 68417.m05094 expressed protein
          Length = 817

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 14/32 (43%), Positives = 22/32 (68%)
 Frame = +3

Query: 342 VEDFRNNRSKQNTRQFSVDSLVRAELRVERHR 437
           V+DFRN RS++  + FSV      ELR++R++
Sbjct: 357 VQDFRNERSRRTGKFFSV-----TELRLQRNQ 383


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,669,728
Number of Sequences: 28952
Number of extensions: 245912
Number of successful extensions: 870
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 847
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 869
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1226538000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)