Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10e03r
         (525 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g48920.1 68414.m05480 nucleolin, putative similar to nuM1 pro...    29   1.9  
At5g08720.1 68418.m01036 expressed protein                             29   2.5  
At5g18525.1 68418.m02190 WD-40 repeat family protein contains Pf...    27   5.8  

>At1g48920.1 68414.m05480 nucleolin, putative similar to nuM1
           protein GI:1279562 from [Medicago sativa]
          Length = 557

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 14/46 (30%), Positives = 27/46 (58%)
 Frame = -3

Query: 373 MDMMVSTLQQQRAVTEQLRREAAIKRIPVSVAVSDIIKYINEHEQE 236
           +D  VS  +Q++ V   +++E A+K++P  V  SD     +E E++
Sbjct: 31  IDTKVSLKKQKKDVIAAVQKEKAVKKVPKKVESSDDSDSESEEEEK 76


>At5g08720.1 68418.m01036 expressed protein
          Length = 719

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 14/32 (43%), Positives = 22/32 (68%)
 Frame = -3

Query: 331 TEQLRREAAIKRIPVSVAVSDIIKYINEHEQE 236
           T+Q RR   ++R  + V  S+I+K+I+EH QE
Sbjct: 521 TKQRRRIPGLQR-DIEVLKSEILKFISEHGQE 551


>At5g18525.1 68418.m02190 WD-40 repeat family protein contains Pfam
           profile PF00400: WD domain, G-beta repeat
          Length = 580

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 24/78 (30%), Positives = 31/78 (39%), Gaps = 2/78 (2%)
 Frame = +3

Query: 234 SSCSCSLIYLMISETATDTGILFIAASLRSCSVTARCCCNVDTIISITAVSERPMLKTKA 413
           +S SC   Y    E   D GIL     + SC  T     N  T   I+  SE P  + +A
Sbjct: 267 ASLSCVSSYHAHEEVVNDIGILSSTGKVASCDGTIH-VWNSQTGKLISLFSESPSDQDQA 325

Query: 414 KL--KD*NWASPCTRRES 461
                  N ++PC R  S
Sbjct: 326 SSDPSSKNNSNPCNRHAS 343


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,356,230
Number of Sequences: 28952
Number of extensions: 155643
Number of successful extensions: 295
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 295
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 295
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 967280384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)