Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10e03f
         (572 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_7877| Best HMM Match : G-gamma (HMM E-Value=6.9e-15)                55   4e-08
SB_27917| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.7  
SB_30234| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.2  
SB_53549| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.2  

>SB_7877| Best HMM Match : G-gamma (HMM E-Value=6.9e-15)
          Length = 70

 Score = 55.2 bits (127), Expect = 4e-08
 Identities = 29/63 (46%), Positives = 39/63 (61%)
 Frame = +3

Query: 174 LQQQRAVTEQLRREAAIKRIPVSVAVSDIIKYINEHEQEDCLLVGFSSQKVNPFREKSSC 353
           LQ+QR V EQLRRE  IKR+ VS    DI+ +  EHE +D L++  + +  NPFR  +  
Sbjct: 9   LQRQRVVVEQLRREVNIKRLKVSQCAGDIVDFCKEHESQDQLVI--NDKDGNPFRGVNKP 66

Query: 354 TVL 362
            VL
Sbjct: 67  CVL 69


>SB_27917| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4554

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
 Frame = +3

Query: 195  TEQLRREAAIKRIPVSVAVSDII-KYINEHEQEDCLLVGFSSQKVNPF 335
            +E    E A + + VS ++ D I K+INE+  E C+L   +S  + PF
Sbjct: 4450 SEVFTSENAHEALSVSESILDQIGKFINENFAESCILALSTSDSLYPF 4497


>SB_30234| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 5222

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 14/28 (50%), Positives = 15/28 (53%)
 Frame = -3

Query: 363  KGQYMNFFHGMDLLSDSKTQPKGNLLAR 280
            KG Y NF HG D L D K  P G+   R
Sbjct: 1159 KGMYKNFTHG-DKLDDCKMCPPGHYCPR 1185


>SB_53549| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 180

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = +2

Query: 113 CFCFQHRPLGHSRN 154
           C+CF +R LGH RN
Sbjct: 158 CYCFANRHLGHKRN 171


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,323,069
Number of Sequences: 59808
Number of extensions: 235046
Number of successful extensions: 461
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 434
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 461
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1361520496
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)