Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10e02r
         (705 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U88168-3|AAC24397.1|  204|Caenorhabditis elegans Ribosomal prote...   250   1e-66
U80440-1|AAK21472.1| 4568|Caenorhabditis elegans Dynein heavy ch...    30   1.4  
L33260-1|AAC37251.1| 4568|Caenorhabditis elegans dynein heavy ch...    30   1.4  
AL132943-1|CAC14390.1| 1042|Caenorhabditis elegans Hypothetical ...    30   1.9  
Z46828-1|CAA86856.1|  542|Caenorhabditis elegans Hypothetical pr...    27   9.9  
U55857-5|AAA98031.1|  602|Caenorhabditis elegans Hypothetical pr...    27   9.9  
AL132948-1|CAC51077.1|  735|Caenorhabditis elegans Hypothetical ...    27   9.9  
AL117203-21|CAN86632.1|  171|Caenorhabditis elegans Hypothetical...    27   9.9  
AL117203-20|CAB55118.1|  244|Caenorhabditis elegans Hypothetical...    27   9.9  

>U88168-3|AAC24397.1|  204|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 15 protein.
          Length = 204

 Score =  250 bits (611), Expect = 1e-66
 Identities = 115/204 (56%), Positives = 143/204 (70%)
 Frame = -3

Query: 652 MGAYRYIQELYRKKLSDVMRFLLRVRVWQYRQLTRMHRAPRPTRPDKARRLGYRAKQXXX 473
           MGAY+Y+QE++RKK SD +R+LLR+R W YRQL+ +HR PRPTRP+KARRLGYRAKQ   
Sbjct: 1   MGAYKYMQEIWRKKQSDALRYLLRIRTWHYRQLSAVHRVPRPTRPEKARRLGYRAKQGFV 60

Query: 472 XXXXXXXXXXXXXXXXXGATYGKPKSHGVNQLKPTRNLQSIAEEXXXXXXXXXXXLSSYW 293
                            G TYGKPK+HGVN+LK  ++ Q++AE            L+SYW
Sbjct: 61  VYRVRVRRGNRKRPVCKGQTYGKPKTHGVNELKNAKSKQAVAEGRAGRRLGSLRVLNSYW 120

Query: 292 VAQDSSYKYFEVILVDPSHKAIRRDPKINWIVNAVHKHREMRGLTSAGRSSRGLGKGHRY 113
           VA+DS+YK++EV+L+DP HKAIRR+P   WI   VHKHRE RGLTSAGR SRGLGKG R+
Sbjct: 121 VAEDSTYKFYEVVLIDPFHKAIRRNPDTQWITKPVHKHREQRGLTSAGRKSRGLGKGWRF 180

Query: 112 SQTKGGSRRAAWLRRNTLQLRRKR 41
           S T+GGS+   W R+NT    RKR
Sbjct: 181 SATRGGSQAKNWKRKNTKVFHRKR 204


>U80440-1|AAK21472.1| 4568|Caenorhabditis elegans Dynein heavy chain
           protein 1 protein.
          Length = 4568

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 18/40 (45%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = -3

Query: 283 DSSYKYFEVILVDPSHKAIRRDP-KINWIVNAVHKHREMR 167
           D  Y  F  +L D + K  R DP K++W V AVHK  E R
Sbjct: 420 DDEYDKFIALLRDINKKK-RDDPSKLSWKVTAVHKRLETR 458


>L33260-1|AAC37251.1| 4568|Caenorhabditis elegans dynein heavy chain
           protein.
          Length = 4568

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 18/40 (45%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = -3

Query: 283 DSSYKYFEVILVDPSHKAIRRDP-KINWIVNAVHKHREMR 167
           D  Y  F  +L D + K  R DP K++W V AVHK  E R
Sbjct: 420 DDEYDKFIALLRDINKKK-RDDPSKLSWKVTAVHKRLETR 458


>AL132943-1|CAC14390.1| 1042|Caenorhabditis elegans Hypothetical
            protein Y116F11B.3 protein.
          Length = 1042

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 19/46 (41%), Positives = 27/46 (58%)
 Frame = +2

Query: 353  GLKVARGLQLVDTMALGLAISGTLSNWTLAATTSHTDSEYNITLFS 490
            GLKVAR   LVD   +G+ + G ++  T  ATT+   + Y  TL+S
Sbjct: 972  GLKVAR--DLVD-QNIGVWLGGQVNITTTTATTTSNSTSYPSTLYS 1014


>Z46828-1|CAA86856.1|  542|Caenorhabditis elegans Hypothetical
           protein R03D7.2 protein.
          Length = 542

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = -3

Query: 628 ELYRKKLSDVMRFLLRVRVWQYRQLTRMHRAPR 530
           EL R  + + +   ++ R W    LTR+HR P+
Sbjct: 264 ELKRAAIGEPLTLAVKGRRWPSMHLTRVHRCPK 296


>U55857-5|AAA98031.1|  602|Caenorhabditis elegans Hypothetical
           protein K08D10.5 protein.
          Length = 602

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = -3

Query: 628 ELYRKKLSDVMRFLLRVRVWQYRQLTRMHRAPR 530
           EL R  + + +   ++ R W    LTR+HR P+
Sbjct: 363 ELKRAAVGEPLTLAVKGRRWSSMHLTRVHRCPK 395


>AL132948-1|CAC51077.1|  735|Caenorhabditis elegans Hypothetical
           protein Y39B6A.1 protein.
          Length = 735

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 17/57 (29%), Positives = 21/57 (36%)
 Frame = +1

Query: 292 PSKSSTHGDHRNDGQHVPQQWIEGCAWASTG*HHGSWACHKWHP*QLDACGHHVAHG 462
           P+    HG+H +   H         A A  G HHG    H  H     +  HH  HG
Sbjct: 452 PAHHGHHGEHHHAPAHHGHHGEHHHAPAHHG-HHGEHGTHHGHHGSHHSPAHHGHHG 507



 Score = 27.5 bits (58), Expect = 9.9
 Identities = 16/56 (28%), Positives = 21/56 (37%)
 Frame = +1

Query: 292 PSKSSTHGDHRNDGQHVPQQWIEGCAWASTG*HHGSWACHKWHP*QLDACGHHVAH 459
           P+    HG+H +   H       G      G HH + A H  H       GHH +H
Sbjct: 500 PAHHGHHGEHHHAPAHHGHHGEHGTHHGHHGEHHHAPAHHGHHGEHGTHHGHHGSH 555


>AL117203-21|CAN86632.1|  171|Caenorhabditis elegans Hypothetical
           protein Y48C3A.18b protein.
          Length = 171

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 12/54 (22%), Positives = 24/54 (44%)
 Frame = +2

Query: 77  PSCPA*ASLCLRVSMSLAETSGAATSRSQTTHLTMLMYSIHDPVDLRIATNGLV 238
           P CP  +++C ++   LA+TS   +  S           +H  +DL +    ++
Sbjct: 48  PDCPIVSTICKKLGQPLAQTSANVSGSSLNPTSIDHFRDLHPNIDLILDAGSII 101


>AL117203-20|CAB55118.1|  244|Caenorhabditis elegans Hypothetical
           protein Y48C3A.18a protein.
          Length = 244

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 12/54 (22%), Positives = 24/54 (44%)
 Frame = +2

Query: 77  PSCPA*ASLCLRVSMSLAETSGAATSRSQTTHLTMLMYSIHDPVDLRIATNGLV 238
           P CP  +++C ++   LA+TS   +  S           +H  +DL +    ++
Sbjct: 121 PDCPIVSTICKKLGQPLAQTSANVSGSSLNPTSIDHFRDLHPNIDLILDAGSII 174


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,006,990
Number of Sequences: 27780
Number of extensions: 331645
Number of successful extensions: 774
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 724
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 770
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1634564590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)