Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10e02f
(629 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0228 - 22137771-22138016,22138109-22138306,22138852-221390... 213 1e-55
05_03_0257 + 11145558-11145876,11148181-11148347,11149114-111493... 210 5e-55
06_02_0082 + 11536799-11537554,11538210-11538334,11538507-11538687 31 0.009
05_02_0037 + 5883285-5884292 31 0.57
03_05_0826 - 27994004-27994966,27995053-27996030,27996101-27996478 31 0.75
01_01_0652 + 4975091-4975585 29 2.3
09_04_0694 - 19529084-19529201,19529464-19529544,19529637-195301... 28 7.0
09_02_0328 - 7293547-7293855,7294161-7294274,7294348-7294429,729... 28 7.0
06_01_1010 + 7866158-7866661 28 7.0
04_03_0673 - 18562497-18563010,18563080-18563471,18563553-185636... 27 9.3
04_03_0196 - 12533947-12534470,12536577-12537039,12537673-12537903 27 9.3
>03_05_0228 -
22137771-22138016,22138109-22138306,22138852-22139018,
22139129-22139132
Length = 204
Score = 213 bits (519), Expect = 1e-55
Identities = 103/193 (53%), Positives = 126/193 (65%), Gaps = 1/193 (0%)
Frame = +3
Query: 54 MGAYRYIQELYRKKLSDVMRFLLRVRVWQYRQLTRMHRAPRPTRPDKARRLGYRAKQXXX 233
MGAY+Y+ EL+R+K SDVMRF+ RVR W+YRQ + R RPTRPDKARRLGY+AKQ
Sbjct: 1 MGAYKYVSELWRRKQSDVMRFVQRVRCWEYRQQPAIVRLTRPTRPDKARRLGYKAKQGYV 60
Query: 234 XXXXXXXXXXXXXXXXXXATYGKPKSHGVNQLKPTRNLQSIAEEXXXXXXXXXXXXSSYW 413
YGKPK G+ QLK RN +S+AEE +SYW
Sbjct: 61 VYRVRVRRGGRKRPVPKGIVYGKPKHQGITQLKFQRNKRSVAEERAGRKLGGLRVLNSYW 120
Query: 414 VAQDSSYKYFEVILVDPSHKAIRRDPKINWIVNAVHKHREMRGLTSAGRSSRGL-GKGHR 590
V +DS+YKYFE+ILVD +H AIR DP+INW+ VHKHRE+RGLTSAG+ RGL GKGH
Sbjct: 121 VNEDSTYKYFEIILVDVAHSAIRNDPRINWLCKPVHKHRELRGLTSAGKKYRGLRGKGHT 180
Query: 591 YSQTKGGSRRAAW 629
+ + + SRRA W
Sbjct: 181 HHKAR-PSRRATW 192
>05_03_0257 +
11145558-11145876,11148181-11148347,11149114-11149311,
11149405-11149650
Length = 309
Score = 210 bits (514), Expect = 5e-55
Identities = 102/192 (53%), Positives = 125/192 (65%), Gaps = 1/192 (0%)
Frame = +3
Query: 57 GAYRYIQELYRKKLSDVMRFLLRVRVWQYRQLTRMHRAPRPTRPDKARRLGYRAKQXXXX 236
GAY+Y+ EL+R+K SDVMRF+ RVR W+YRQ + R RPTRPDKARRLGY+AKQ
Sbjct: 107 GAYKYVSELWRRKQSDVMRFVQRVRCWEYRQQPAIVRLTRPTRPDKARRLGYKAKQGYVV 166
Query: 237 XXXXXXXXXXXXXXXXXATYGKPKSHGVNQLKPTRNLQSIAEEXXXXXXXXXXXXSSYWV 416
YGKPK G+ QLK RN +S+AEE +SYWV
Sbjct: 167 YRVRVRRGGRKRPVPKGIVYGKPKHQGITQLKFQRNKRSVAEERAGRKLGGLRVLNSYWV 226
Query: 417 AQDSSYKYFEVILVDPSHKAIRRDPKINWIVNAVHKHREMRGLTSAGRSSRGL-GKGHRY 593
+DS+YKYFE+ILVD +H AIR DP+INW+ VHKHRE+RGLTSAG+ RGL GKGH +
Sbjct: 227 NEDSTYKYFEIILVDVAHSAIRNDPRINWLCKPVHKHRELRGLTSAGKKYRGLRGKGHTH 286
Query: 594 SQTKGGSRRAAW 629
+ + SRRA W
Sbjct: 287 HKAR-PSRRATW 297
>06_02_0082 + 11536799-11537554,11538210-11538334,11538507-11538687
Length = 353
Score = 31.5 bits (68), Expect(2) = 0.009
Identities = 13/18 (72%), Positives = 15/18 (83%)
Frame = +3
Query: 441 FEVILVDPSHKAIRRDPK 494
FE+ILVD +H AIR DPK
Sbjct: 299 FEIILVDVAHSAIRDDPK 316
Score = 25.0 bits (52), Expect(2) = 0.009
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = +3
Query: 294 YGKPKSHGVNQLKPTRN 344
Y KPK G+ QLK RN
Sbjct: 276 YSKPKHQGITQLKFQRN 292
>05_02_0037 + 5883285-5884292
Length = 335
Score = 31.5 bits (68), Expect = 0.57
Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 3/54 (5%)
Frame = +2
Query: 137 AVPSVDSYAPRSQAHKAGQSPKTRLP---C*TRLCCIQNPCATWWPQASSC*GC 289
AV ++ AP ++ +A +SP C R CC +P + WWP+ GC
Sbjct: 271 AVFPTEAAAPATEGKEAAKSPDAAAQGGWCLFR-CCWPSPPSVWWPRCGCGGGC 323
>03_05_0826 - 27994004-27994966,27995053-27996030,27996101-27996478
Length = 772
Score = 31.1 bits (67), Expect = 0.75
Identities = 14/43 (32%), Positives = 26/43 (60%)
Frame = -1
Query: 365 FLSNGLKVARGLQLVDTMALGLAISGTLSNWTLAATTSHTDSE 237
+++ G +V G++ V +ALGL ++GT W L T +D++
Sbjct: 587 YVALGSEVPLGVEKVHELALGLELAGTRFLWALRKPTGVSDAD 629
>01_01_0652 + 4975091-4975585
Length = 164
Score = 29.5 bits (63), Expect = 2.3
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +3
Query: 549 SAGRSSRGLGKGHRYSQTKGGSRRAAW 629
+AG+ GKG R + +GG RR W
Sbjct: 37 AAGKRREAAGKGGRQREARGGGRRMRW 63
>09_04_0694 -
19529084-19529201,19529464-19529544,19529637-19530136,
19530444-19530540,19530633-19530775,19531187-19531528,
19531810-19532031,19532292-19532330,19532386-19532601,
19533101-19533196,19533416-19533481,19533777-19533821,
19533903-19533965,19534274-19534344,19534599-19534699,
19534896-19534972,19535856-19535900
Length = 773
Score = 27.9 bits (59), Expect = 7.0
Identities = 17/65 (26%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
Frame = +3
Query: 438 YFEVILVDPSHKAIRR-DPKINWIVNAVHKHREMRGLTSAGRSSRGLGKGHRYSQTKGGS 614
Y + LV+ + R+ D + W N ++ G+ + GRSS + + S +KG +
Sbjct: 202 YEQAALVERMQEFKRQIDRESRWSPNGINDSPNGDGIQAIGRSSHKMIEAVMQSASKGKA 261
Query: 615 RRAAW 629
+AW
Sbjct: 262 HISAW 266
>09_02_0328 -
7293547-7293855,7294161-7294274,7294348-7294429,
7295318-7295401,7296199-7296399,7296516-7296853,
7296968-7297084
Length = 414
Score = 27.9 bits (59), Expect = 7.0
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = +3
Query: 540 GLTSAGRSSRGLGKGHRYSQTKGGSRRAA 626
G++ +G G G+G KGGSR AA
Sbjct: 174 GVSGSGAGGGGRGRGRGSDDAKGGSRAAA 202
>06_01_1010 + 7866158-7866661
Length = 167
Score = 27.9 bits (59), Expect = 7.0
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = +3
Query: 528 REMRGLTSAGRSSRGLGKGHRYSQTKGGSRR 620
R+ G+ G + G GKG R+ GG RR
Sbjct: 57 RKEAGMPGGGARAPGSGKGRRWRPEHGGKRR 87
>04_03_0673 -
18562497-18563010,18563080-18563471,18563553-18563649,
18563977-18564149,18564349-18564485,18564806-18564872
Length = 459
Score = 27.5 bits (58), Expect = 9.3
Identities = 12/27 (44%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Frame = +2
Query: 260 WPQASSC*G-CHLWQAQEPWCQPVEAH 337
WPQ CHL Q +EPW ++AH
Sbjct: 46 WPQDQRWYQHCHLQQEEEPWRCQIKAH 72
>04_03_0196 - 12533947-12534470,12536577-12537039,12537673-12537903
Length = 405
Score = 27.5 bits (58), Expect = 9.3
Identities = 15/45 (33%), Positives = 21/45 (46%)
Frame = +3
Query: 489 PKINWIVNAVHKHREMRGLTSAGRSSRGLGKGHRYSQTKGGSRRA 623
P+++ VH+ RG ++AG R G S G SRRA
Sbjct: 264 PRVSGTKRPVHRGLGPRGWSTAGPRDRRSGSASGRSDGAGSSRRA 308
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,467,750
Number of Sequences: 37544
Number of extensions: 393544
Number of successful extensions: 997
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 973
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 994
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1537558360
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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