Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10e02f
(629 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_46389| Best HMM Match : No HMM Matches (HMM E-Value=.) 242 2e-64
SB_13379| Best HMM Match : WD40 (HMM E-Value=1.3e-39) 30 1.8
SB_32922| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.4
SB_3451| Best HMM Match : HOK_GEF (HMM E-Value=9.4) 29 3.1
SB_37342| Best HMM Match : NOSIC (HMM E-Value=5.4e-33) 29 3.1
SB_19195| Best HMM Match : LEA_4 (HMM E-Value=0.00053) 29 4.1
SB_9981| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.2
SB_41992| Best HMM Match : efhand (HMM E-Value=2.4e-10) 27 9.5
SB_52883| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.5
>SB_46389| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 204
Score = 242 bits (592), Expect = 2e-64
Identities = 113/192 (58%), Positives = 135/192 (70%)
Frame = +3
Query: 54 MGAYRYIQELYRKKLSDVMRFLLRVRVWQYRQLTRMHRAPRPTRPDKARRLGYRAKQXXX 233
MGAY+Y++ELY+KK SD++RFLLRVR WQYRQLT +HRA RPTRPDKARRLGY+AKQ
Sbjct: 1 MGAYKYLEELYKKKQSDLLRFLLRVRCWQYRQLTAIHRATRPTRPDKARRLGYKAKQGFV 60
Query: 234 XXXXXXXXXXXXXXXXXXATYGKPKSHGVNQLKPTRNLQSIAEEXXXXXXXXXXXXSSYW 413
ATYGKP + GVN+LK R+L+S+AEE +SYW
Sbjct: 61 IYRVRVRRGGRKRPVPKGATYGKPVNQGVNELKFQRSLRSVAEERAGRYCGGLRVLNSYW 120
Query: 414 VAQDSSYKYFEVILVDPSHKAIRRDPKINWIVNAVHKHREMRGLTSAGRSSRGLGKGHRY 593
V QDS YKYFEVI+VDP HKAIRRD +INWI HKHRE+RGLT+AG +RG+ KGH Y
Sbjct: 121 VGQDSIYKYFEVIMVDPFHKAIRRDARINWICKPTHKHRELRGLTAAGTKNRGMRKGHNY 180
Query: 594 SQTKGGSRRAAW 629
++ G SRRA W
Sbjct: 181 NKVIGSSRRANW 192
>SB_13379| Best HMM Match : WD40 (HMM E-Value=1.3e-39)
Length = 574
Score = 29.9 bits (64), Expect = 1.8
Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Frame = -3
Query: 204 VFGLC--PALWAWERGAYESTDGTAILSHATKNA*HRSVFSYTTPEYICRHPS 52
V+ +C AL A+ + STDGT I+ + + VF+ T E +C HPS
Sbjct: 403 VYDVCLPKALPAYFQCVSASTDGTCIIWNLESFVRSQIVFANTMFEAVCYHPS 455
>SB_32922| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 489
Score = 29.5 bits (63), Expect = 2.4
Identities = 14/33 (42%), Positives = 21/33 (63%)
Frame = -1
Query: 581 LAETSGAATSRSQTTHLTMLMYSIHDPVDLRIA 483
+ ++SG AT +S L + + S DPVD+RIA
Sbjct: 203 IRKSSGNATHQSHNCCLDLRLMSSEDPVDVRIA 235
>SB_3451| Best HMM Match : HOK_GEF (HMM E-Value=9.4)
Length = 173
Score = 29.1 bits (62), Expect = 3.1
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = +3
Query: 111 RFLLRVRVWQYRQLTRMHRAPRPTRPDKARRLGYRAKQ 224
+F ++ YR+ T+MH +RP + R G+R KQ
Sbjct: 16 KFFVKRLTTPYRRRTQMHLLVSTSRPASSWRRGFRGKQ 53
>SB_37342| Best HMM Match : NOSIC (HMM E-Value=5.4e-33)
Length = 300
Score = 29.1 bits (62), Expect = 3.1
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = +3
Query: 516 VHKHREMRGLTSAGRSSRGLGKGHRYSQTK 605
+H + ++GLT A S LG GH YS+ K
Sbjct: 61 MHFDKMIKGLTGAMASKAQLGLGHSYSRAK 90
>SB_19195| Best HMM Match : LEA_4 (HMM E-Value=0.00053)
Length = 1152
Score = 28.7 bits (61), Expect = 4.1
Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 5/56 (8%)
Frame = +2
Query: 101 RCYAFFVA---CESMA-VPSVDSYAPRSQAHKAGQSPKT-RLPC*TRLCCIQNPCA 253
RCY VA C ++ P +D+ A + P T ++PC C QNPC+
Sbjct: 702 RCYDINVAGINCRIISHPPKIDTTGGMQMAQQLSYPPYTGQVPCLPSSCTPQNPCS 757
>SB_9981| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 780
Score = 27.9 bits (59), Expect = 7.2
Identities = 23/75 (30%), Positives = 32/75 (42%)
Frame = -1
Query: 302 LAISGTLSNWTLAATTSHTDSEYNITLFSTVA*SSGFVRPCGPGSAVHTSQLTVLPYSHT 123
LA +GT LA T ++ +Y I ++ +R HT LT YSHT
Sbjct: 709 LAYTGTYKYGILAYTGTY---KYGILAYTGTYTGYSHIRGLTNTGYSHTRGLTNTGYSHT 765
Query: 122 QQKTHNIAQFFPIQL 78
+ T+N F I L
Sbjct: 766 RGLTNNGRTLFSIVL 780
>SB_41992| Best HMM Match : efhand (HMM E-Value=2.4e-10)
Length = 1303
Score = 27.5 bits (58), Expect = 9.5
Identities = 14/20 (70%), Positives = 14/20 (70%), Gaps = 1/20 (5%)
Frame = -3
Query: 582 PCRDLGSC-DQPKSDHASHD 526
PCRD GSC D P D ASHD
Sbjct: 1162 PCRD-GSCRDAPFRDGASHD 1180
>SB_52883| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1434
Score = 27.5 bits (58), Expect = 9.5
Identities = 13/38 (34%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
Frame = +2
Query: 143 PSVDSYAPRSQAHKAGQSPKT-RLPC*TRLCCIQNPCA 253
P D+ AH+ P T ++PC C QNPC+
Sbjct: 239 PKTDANGGMQIAHQLPYPPYTGQIPCLPSSCAPQNPCS 276
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,123,516
Number of Sequences: 59808
Number of extensions: 459656
Number of successful extensions: 998
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 903
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 995
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1572561250
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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