Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10e02f
         (629 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        26   0.35 
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        26   0.35 
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        26   0.35 
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    23   3.2  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               22   5.7  
X91509-1|CAA62809.1|  103|Apis mellifera histone H4 protein.           21   7.5  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    21   7.5  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    21   7.5  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   7.5  
AY352276-1|AAQ67417.1|  385|Apis mellifera complementary sex det...    21   7.5  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    21   9.9  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    21   9.9  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    21   9.9  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    21   9.9  

>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 25.8 bits (54), Expect = 0.35
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +3

Query: 3   FYGLPVGHARRLPQAAKMGAYRY 71
           F+GLPVG    +P +     YRY
Sbjct: 262 FFGLPVGVTAAIPTSENPADYRY 284


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 25.8 bits (54), Expect = 0.35
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +3

Query: 3   FYGLPVGHARRLPQAAKMGAYRY 71
           F+GLPVG    +P +     YRY
Sbjct: 262 FFGLPVGVTAAIPTSENPADYRY 284


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 25.8 bits (54), Expect = 0.35
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +3

Query: 3   FYGLPVGHARRLPQAAKMGAYRY 71
           F+GLPVG    +P +     YRY
Sbjct: 262 FFGLPVGVTAAIPTSENPADYRY 284


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 7/17 (41%), Positives = 10/17 (58%)
 Frame = +1

Query: 7   TVYLWDTRDVCHRLLRW 57
           T+Y +D RD C    +W
Sbjct: 402 TIYKYDVRDGCRTPFQW 418


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 6/13 (46%), Positives = 9/13 (69%)
 Frame = +1

Query: 34  VCHRLLRWVPTDI 72
           VCH  + W+PT +
Sbjct: 807 VCHNGMNWMPTHL 819


>X91509-1|CAA62809.1|  103|Apis mellifera histone H4 protein.
          Length = 103

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = +3

Query: 543 LTSAGRSSRGLGKG 584
           +T  G+  +GLGKG
Sbjct: 1   MTGRGKGGKGLGKG 14


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 7/20 (35%), Positives = 10/20 (50%)
 Frame = -3

Query: 204 VFGLCPALWAWERGAYESTD 145
           +  +C  LW W R  Y  T+
Sbjct: 51  ILPVCNGLWRWIRLTYGQTN 70


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 7/20 (35%), Positives = 10/20 (50%)
 Frame = -3

Query: 204 VFGLCPALWAWERGAYESTD 145
           +  +C  LW W R  Y  T+
Sbjct: 89  ILPVCNGLWRWIRLTYGQTN 108


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 8/34 (23%), Positives = 14/34 (41%)
 Frame = +2

Query: 107  YAFFVACESMAVPSVDSYAPRSQAHKAGQSPKTR 208
            Y  +   ++   P+     P    H+A +  KTR
Sbjct: 1213 YTVYTKADNAEEPTSQKVPPNQLTHEASELDKTR 1246


>AY352276-1|AAQ67417.1|  385|Apis mellifera complementary sex
           determiner protein.
          Length = 385

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 10/27 (37%), Positives = 13/27 (48%)
 Frame = +3

Query: 510 NAVHKHREMRGLTSAGRSSRGLGKGHR 590
           N+  K+RE     S  R  RG  + HR
Sbjct: 287 NSYRKYRETSKERSRDRRERGRSREHR 313


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 8/24 (33%), Positives = 15/24 (62%), Gaps = 4/24 (16%)
 Frame = +2

Query: 395 CVELLLG----CTRFFIQVFRGYP 454
           C+ LL+G    C +F + + +G+P
Sbjct: 284 CMMLLIGHWSGCLQFLVPMLQGFP 307


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 6/14 (42%), Positives = 11/14 (78%)
 Frame = -3

Query: 198 GLCPALWAWERGAY 157
           GLCP++  ++RG +
Sbjct: 357 GLCPSMANYDRGVF 370


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 8/24 (33%), Positives = 15/24 (62%), Gaps = 4/24 (16%)
 Frame = +2

Query: 395 CVELLLG----CTRFFIQVFRGYP 454
           C+ LL+G    C +F + + +G+P
Sbjct: 252 CMMLLIGHWSGCLQFLVPMLQGFP 275


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 6/14 (42%), Positives = 11/14 (78%)
 Frame = -3

Query: 198 GLCPALWAWERGAY 157
           GLCP++  ++RG +
Sbjct: 447 GLCPSMANYDRGVF 460


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 178,634
Number of Sequences: 438
Number of extensions: 3824
Number of successful extensions: 15
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18826962
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)