Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10e02f
         (629 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g17390.1 68417.m02606 60S ribosomal protein L15 (RPL15B)           213   6e-56
At4g16720.1 68417.m02526 60S ribosomal protein L15 (RPL15A)           213   6e-56
At3g18050.1 68416.m02296 expressed protein                             29   1.9  
At5g54770.1 68418.m06822 thiazole biosynthetic enzyme, chloropla...    29   3.4  
At3g11170.1 68416.m01355 omega-3 fatty acid desaturase, chloropl...    28   4.4  
At4g39520.1 68417.m05588 GTP-binding protein, putative similar t...    27   7.8  

>At4g17390.1 68417.m02606 60S ribosomal protein L15 (RPL15B)
          Length = 204

 Score =  213 bits (521), Expect = 6e-56
 Identities = 103/193 (53%), Positives = 127/193 (65%), Gaps = 1/193 (0%)
 Frame = +3

Query: 54  MGAYRYIQELYRKKLSDVMRFLLRVRVWQYRQLTRMHRAPRPTRPDKARRLGYRAKQXXX 233
           MGAY+Y+ EL+RKK SDVMRFL RVR W+YRQ   + R  RPTRPDKARRLGY+AKQ   
Sbjct: 1   MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQQPSIVRLVRPTRPDKARRLGYKAKQGFV 60

Query: 234 XXXXXXXXXXXXXXXXXXATYGKPKSHGVNQLKPTRNLQSIAEEXXXXXXXXXXXXSSYW 413
                               YGKP + GV QLK  R+ +S+AEE            +SYW
Sbjct: 61  VYRVRVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVVNSYW 120

Query: 414 VAQDSSYKYFEVILVDPSHKAIRRDPKINWIVNAVHKHREMRGLTSAGRSSRGL-GKGHR 590
           + +DS+YKY+E+ILVDP+H A+R DP+INWI N VHKHRE+RGLTS G+ +RGL GKGH 
Sbjct: 121 LNEDSTYKYYEIILVDPAHNAVRNDPRINWICNPVHKHRELRGLTSEGKKNRGLRGKGHN 180

Query: 591 YSQTKGGSRRAAW 629
             + +  SRRA W
Sbjct: 181 NHKNR-PSRRATW 192


>At4g16720.1 68417.m02526 60S ribosomal protein L15 (RPL15A)
          Length = 204

 Score =  213 bits (521), Expect = 6e-56
 Identities = 103/193 (53%), Positives = 127/193 (65%), Gaps = 1/193 (0%)
 Frame = +3

Query: 54  MGAYRYIQELYRKKLSDVMRFLLRVRVWQYRQLTRMHRAPRPTRPDKARRLGYRAKQXXX 233
           MGAY+Y+ EL+RKK SDVMRFL RVR W+YRQ   + R  RPTRPDKARRLGY+AKQ   
Sbjct: 1   MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQQPSIVRLVRPTRPDKARRLGYKAKQGFV 60

Query: 234 XXXXXXXXXXXXXXXXXXATYGKPKSHGVNQLKPTRNLQSIAEEXXXXXXXXXXXXSSYW 413
                               YGKP + GV QLK  R+ +S+AEE            +SYW
Sbjct: 61  VYRVRVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVVNSYW 120

Query: 414 VAQDSSYKYFEVILVDPSHKAIRRDPKINWIVNAVHKHREMRGLTSAGRSSRGL-GKGHR 590
           + +DS+YKY+E+ILVDP+H A+R DP+INWI N VHKHRE+RGLTS G+ +RGL GKGH 
Sbjct: 121 LNEDSTYKYYEIILVDPAHNAVRNDPRINWICNPVHKHRELRGLTSEGKKNRGLRGKGHN 180

Query: 591 YSQTKGGSRRAAW 629
             + +  SRRA W
Sbjct: 181 NHKNR-PSRRATW 192


>At3g18050.1 68416.m02296 expressed protein
          Length = 335

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 16/40 (40%), Positives = 22/40 (55%)
 Frame = -3

Query: 192 CPALWAWERGAYESTDGTAILSHATKNA*HRSVFSYTTPE 73
           CP L AW   AY +T  +  +S A +N+   S  + TTPE
Sbjct: 82  CPVLGAWLYSAYSTTALSRSISAAARNS-SSSSAAVTTPE 120


>At5g54770.1 68418.m06822 thiazole biosynthetic enzyme, chloroplast
           (ARA6) (THI1) (THI4) identical to SP|Q38814 Thiazole
           biosynthetic enzyme, chloroplast precursor (ARA6)
           {Arabidopsis thaliana}
          Length = 349

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 17/60 (28%), Positives = 26/60 (43%), Gaps = 2/60 (3%)
 Frame = -1

Query: 350 LKVARGLQLVDTMALGLAISGTLSNWTLAATTSHTDS--EYNITLFSTVA*SSGFVRPCG 177
           +K+   +   D +  G  + G ++NW L A   HT S  + N+     V  S G   P G
Sbjct: 179 VKLFNAVAAEDLIVKGNRVGGVVTNWALVAQNHHTQSCMDPNVMEAKIVVSSCGHDGPFG 238


>At3g11170.1 68416.m01355 omega-3 fatty acid desaturase, chloroplast
           (FAD7) (FADD) identical to omega-3 fatty acid
           desaturase, chloroplast precursor SP:P46310 [Arabidopsis
           thaliana (Mouse-ear cress)]; identical to Pfam profile
           PF00487: Fatty acid desaturase; identical to cDNA
           plastid fatty acid desaturase GI:809491
          Length = 446

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +3

Query: 408 YWVAQDSSYKYFEVILVDPSHKAIRRDPKINWIV 509
           YW+AQ + +    V+  D  H +   DPK+N +V
Sbjct: 147 YWLAQGTMFWALFVLGHDCGHGSFSNDPKLNSVV 180


>At4g39520.1 68417.m05588 GTP-binding protein, putative similar to
           SP|Q9Y295 Developmentally regulated GTP-binding protein
           1 (DRG 1) {Homo sapiens}; contains Pfam profiles
           PF02824: TGS domain, PF01018: GTP1/OBG family
          Length = 369

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = +3

Query: 129 RVWQYRQLTRMHRAPRPTRPD 191
           ++W+Y  LTR++  P+   PD
Sbjct: 285 KIWEYLDLTRIYTKPKAMNPD 305


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,213,075
Number of Sequences: 28952
Number of extensions: 291610
Number of successful extensions: 696
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 679
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 694
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1285411824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)