Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10e01r
         (760 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1347.07 |rex2||RNA exonuclease|Schizosaccharomyces pombe|chr...    93   4e-20
SPCC162.11c |||uridine kinase |Schizosaccharomyces pombe|chr 3||...    25   8.9  

>SPBC1347.07 |rex2||RNA exonuclease|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 180

 Score = 93.1 bits (221), Expect = 4e-20
 Identities = 47/100 (47%), Positives = 70/100 (70%), Gaps = 1/100 (1%)
 Frame = -2

Query: 732 SDTSLAEAERIILKFVSNHVPEKICPL-AGNSIYMDRMFLIKYMPKLNDYLHYRCIDVST 556
           S+ ++ + E  +L ++  ++P+K   L AGNS++ D  FL   MPK+ ++LHYR IDVST
Sbjct: 78  SNLTVKDVENQLLAYIKKYIPKKREALIAGNSVHADVRFLSVEMPKIIEHLHYRIIDVST 137

Query: 555 VKELAKRWYPREYSLIPQKKFEHRALNDILESVQELKYYK 436
           +KELAKRW P   +    KK +HRAL+DILES+ EL++Y+
Sbjct: 138 IKELAKRWCPDIPAY--DKKGDHRALSDILESIGELQHYR 175


>SPCC162.11c |||uridine kinase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 454

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 23/88 (26%), Positives = 41/88 (46%)
 Frame = -2

Query: 741 LP*SDTSLAEAERIILKFVSNHVPEKICPLAGNSIYMDRMFLIKYMPKLNDYLHYRCIDV 562
           LP ++T L  A  IIL+ +     EKI  L   S+++D    +    +LN  ++YR  D+
Sbjct: 114 LPETNT-LFGASIIILEGIFALYDEKIRSLLDVSVFLDTDSDVCLSRRLNRDINYRGRDI 172

Query: 561 STVKELAKRWYPREYSLIPQKKFEHRAL 478
             V E   ++    Y    +++  +  L
Sbjct: 173 VGVLEQYNKFVKPSYENFVRRQLSYTDL 200


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,024,191
Number of Sequences: 5004
Number of extensions: 60188
Number of successful extensions: 122
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 363302114
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)