Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10e01r
         (760 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0268 - 13663387-13663505,13663935-13664025,13664788-136648...   101   5e-22
02_03_0150 - 15750329-15750450,15751554-15751644,15751967-157520...   100   3e-21
01_06_1556 - 38222071-38222708,38222795-38222822,38222950-382230...    31   1.3  

>04_03_0268 -
           13663387-13663505,13663935-13664025,13664788-13664874,
           13665849-13665904,13666788-13666841,13667413-13667523,
           13668293-13668419
          Length = 214

 Score =  101 bits (243), Expect = 5e-22
 Identities = 46/102 (45%), Positives = 68/102 (66%)
 Frame = -2

Query: 732 SDTSLAEAERIILKFVSNHVPEKICPLAGNSIYMDRMFLIKYMPKLNDYLHYRCIDVSTV 553
           SD S  +AE+ +L F+  ++      +AGNS+YMD +FL KYMP L     +  +DVS++
Sbjct: 106 SDISENDAEKQVLDFIRKYIGSATPLIAGNSVYMDLLFLKKYMPHLAAIFSHVIVDVSSI 165

Query: 552 KELAKRWYPREYSLIPQKKFEHRALNDILESVQELKYYKENI 427
             L  RW+P+E    P+K+  HRA++DI ES++EL+YYKENI
Sbjct: 166 SALCSRWFPKERKHAPRKEKNHRAMDDIRESIKELQYYKENI 207


>02_03_0150 -
           15750329-15750450,15751554-15751644,15751967-15752053,
           15752605-15752660,15752812-15752893,15753141-15753217,
           15754028-15754138,15754744-15754906,15755375-15755433,
           15755882-15756011
          Length = 325

 Score = 99.5 bits (237), Expect = 3e-21
 Identities = 48/102 (47%), Positives = 65/102 (63%)
 Frame = -2

Query: 732 SDTSLAEAERIILKFVSNHVPEKICPLAGNSIYMDRMFLIKYMPKLNDYLHYRCIDVSTV 553
           S  S  +AE  +L FV  HV      +AGNS+Y+D +FL  YMP+L     +  +DVS++
Sbjct: 216 STISEHDAETQVLDFVKKHVGSSPPLIAGNSVYVDLLFLKNYMPQLAAIFSHVIVDVSSI 275

Query: 552 KELAKRWYPREYSLIPQKKFEHRALNDILESVQELKYYKENI 427
             L  RWYP+E    PQK  +HRA+NDI ES+ ELKYY++NI
Sbjct: 276 MALCIRWYPKERKRTPQKGKKHRAMNDIKESIAELKYYEDNI 317


>01_06_1556 -
           38222071-38222708,38222795-38222822,38222950-38223070,
           38223206-38223318,38223424-38223506,38223868-38223930,
           38224100-38224254,38224411-38224580,38225101-38225189,
           38225304-38225496,38225655-38225779,38226069-38226475,
           38226855-38226919,38227414-38227692,38227772-38227845,
           38228241-38228292,38228366-38228473,38228871-38228972,
           38229100-38229173,38229262-38229435,38229667-38229771,
           38229867-38229977,38230364-38230487
          Length = 1150

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 12/52 (23%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
 Frame = -2

Query: 600 KLNDYLHYRCIDVSTVKELAKR--WYPREYSLIPQKKFEHRALNDILESVQE 451
           ++  YL+  C+      E  ++  W+  ++++  ++KF H  L D+L + Q+
Sbjct: 414 RVQSYLNKNCLPKEVYSEDQRKLEWFEVDHAIACRRKFHHEGLCDVLATFQD 465


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,369,002
Number of Sequences: 37544
Number of extensions: 311975
Number of successful extensions: 647
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 640
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 647
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2027850416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)