Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10e01r
         (760 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_22714| Best HMM Match : TPR_2 (HMM E-Value=1.2e-17)                 29   5.4  
SB_33744| Best HMM Match : SMC_N (HMM E-Value=0)                       28   9.5  

>SB_22714| Best HMM Match : TPR_2 (HMM E-Value=1.2e-17)
          Length = 455

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 23/72 (31%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
 Frame = -2

Query: 756 QGDRGLP*SD-TSLAEAERIILKFVSNHVPEKICPLAGNSIYMDRMFLIKYMPKLNDYLH 580
           +G+ G P  +  + AE + ++  F++    EKICP  G    +D   L+K  PK N  L 
Sbjct: 185 KGESGQPPFEIVNKAENKAVLTSFINAIRSEKICP-EGRDECIDA--LVKVFPK-NKLLI 240

Query: 579 YRCIDVSTVKEL 544
              +++  VKEL
Sbjct: 241 LMFVNMKGVKEL 252


>SB_33744| Best HMM Match : SMC_N (HMM E-Value=0)
          Length = 1014

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 13/41 (31%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = -2

Query: 567 DVSTVKELAKRWYPREYSLIPQKKFEHRAL-NDILESVQEL 448
           +V+  K L      R Y++IP  K  HR + ND+++  ++L
Sbjct: 378 EVTGKKLLQNGQLKRRYTIIPLNKISHRTIANDVVKRAEQL 418


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,659,611
Number of Sequences: 59808
Number of extensions: 414563
Number of successful extensions: 790
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 718
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 790
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2070332524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)