Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10e01r
         (760 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z72502-5|CAA96590.1|  193|Caenorhabditis elegans Hypothetical pr...   118   6e-27
Z68342-3|CAA92773.1|  751|Caenorhabditis elegans Hypothetical pr...    29   4.7  
AL031627-10|CAA20949.1|  301|Caenorhabditis elegans Hypothetical...    29   4.7  

>Z72502-5|CAA96590.1|  193|Caenorhabditis elegans Hypothetical
           protein C08B6.8 protein.
          Length = 193

 Score =  118 bits (283), Expect = 6e-27
 Identities = 55/102 (53%), Positives = 75/102 (73%)
 Frame = -2

Query: 732 SDTSLAEAERIILKFVSNHVPEKICPLAGNSIYMDRMFLIKYMPKLNDYLHYRCIDVSTV 553
           S  S+A+AE  ++ F+  H      P+AGNSIYMDR+F+ KYMPKL+ + HYRCIDVST+
Sbjct: 85  SKYSMADAENEVIDFLKLHALPGKSPIAGNSIYMDRLFIKKYMPKLDKFAHYRCIDVSTI 144

Query: 552 KELAKRWYPREYSLIPQKKFEHRALNDILESVQELKYYKENI 427
           K L +RWYP +Y   P+K+  HRA +DI+ES+ ELK Y+E+I
Sbjct: 145 KGLVQRWYP-DYK-HPKKQCTHRAFDDIMESIAELKNYRESI 184


>Z68342-3|CAA92773.1|  751|Caenorhabditis elegans Hypothetical
           protein F38E11.4 protein.
          Length = 751

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 15/50 (30%), Positives = 19/50 (38%)
 Frame = -2

Query: 645 NSIYMDRMFLIKYMPKLNDYLHYRCIDVSTVKELAKRWYPREYSLIPQKK 496
           N     ++F    +  L DY    C DVS   E    W   E  LI + K
Sbjct: 183 NKFIYPKLFKTNILDTLVDYFENNCADVSCKPEETLHWVRTEEYLIDESK 232


>AL031627-10|CAA20949.1|  301|Caenorhabditis elegans Hypothetical
           protein Y102A5C.19 protein.
          Length = 301

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 24/80 (30%), Positives = 40/80 (50%)
 Frame = -2

Query: 675 VPEKICPLAGNSIYMDRMFLIKYMPKLNDYLHYRCIDVSTVKELAKRWYPREYSLIPQKK 496
           V E +  LA N+ + +R  ++K +    + L+++   +   K +   +  RE S I QK 
Sbjct: 110 VDEFLIQLATNN-FNERKIILKAIESFFESLNFK---LKAKKVIIDDFTAREVSEILQK- 164

Query: 495 FEHRALNDILESVQELKYYK 436
           FE   L +I    Q LKYY+
Sbjct: 165 FEPEILEEITLQAQFLKYYE 184


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,517,415
Number of Sequences: 27780
Number of extensions: 331583
Number of successful extensions: 730
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 701
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 729
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1809061256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)