Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10e01r
         (760 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g26970.1 68415.m03235 exonuclease family protein contains exo...   100   2e-21
At2g39780.1 68415.m04884 ribonuclease 2 (RNS2) identical to ribo...    28   5.9  

>At2g26970.1 68415.m03235 exonuclease family protein contains
           exonuclease domain, Pfam:PF00929
          Length = 222

 Score = 99.5 bits (237), Expect = 2e-21
 Identities = 48/96 (50%), Positives = 65/96 (67%)
 Frame = -2

Query: 714 EAERIILKFVSNHVPEKICPLAGNSIYMDRMFLIKYMPKLNDYLHYRCIDVSTVKELAKR 535
           EAE+ +++FV  HV      LAGNS+Y+D +FL KYMP+L     +  +DVS+VK L  R
Sbjct: 122 EAEQKVIEFVKKHVGSGNPLLAGNSVYVDFLFLKKYMPELAALFPHILVDVSSVKALCAR 181

Query: 534 WYPREYSLIPQKKFEHRALNDILESVQELKYYKENI 427
           W+P E    P KK  HRA++DI ES++ELKYYK+ I
Sbjct: 182 WFPIERRKAPAKKNNHRAMDDIRESIKELKYYKKTI 217


>At2g39780.1 68415.m04884 ribonuclease 2 (RNS2) identical to
           ribonuclease 2 precursor SP:P42814, GI:289210; contains
           a ribonuclease T2 family histidine active site signature
           (PDOC00459)
          Length = 259

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = -2

Query: 264 GFFCYGAAIHNCSRNIICAPIVVPTDFCLH 175
           G +C G   H CS+N  C     PT F +H
Sbjct: 43  GTYCRGTR-HCCSKNACCRGSDAPTQFTIH 71


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,898,435
Number of Sequences: 28952
Number of extensions: 281105
Number of successful extensions: 589
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 582
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 589
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1692519896
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)