Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10e01f
         (611 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1347.07 |rex2||RNA exonuclease|Schizosaccharomyces pombe|chr...    75   6e-15
SPAPB1A10.07c |||sphingolipid biosynthesis protein|Schizosacchar...    28   0.93 
SPAC2E1P5.05 |||U3 snoRNP-associated protein Rrp9 |Schizosacchar...    27   2.8  
SPBC713.06 |adl1|lig3|DNA ligase |Schizosaccharomyces pombe|chr ...    25   6.5  
SPBC83.11 |||triose phosphate transporter|Schizosaccharomyces po...    25   8.6  
SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces ...    25   8.6  

>SPBC1347.07 |rex2||RNA exonuclease|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 180

 Score = 75.4 bits (177), Expect = 6e-15
 Identities = 33/71 (46%), Positives = 48/71 (67%)
 Frame = +2

Query: 389 DIAQRIVWMDLEMTGLDIENDHIMEIACLVTDAQLNVVATGPDIVINLPEVTLNKMNNWC 568
           ++ Q +VW+D EMTGL++    +ME+A ++TD  L  V    D VI L E  L++MN+WC
Sbjct: 3   NLKQPLVWIDCEMTGLEVGKHVLMEVAAIITDGNLRPVEEKFDAVIKLDEKQLSEMNDWC 62

Query: 569 KVQHGETGLTE 601
             QHG++GLTE
Sbjct: 63  IEQHGKSGLTE 73


>SPAPB1A10.07c |||sphingolipid biosynthesis
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 441

 Score = 28.3 bits (60), Expect = 0.93
 Identities = 12/31 (38%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
 Frame = +1

Query: 181 MYVM*CCTTI-NFIFFCVMTCSYVQHVKSIS 270
           MYV+    TI  ++FFC  +CS+ Q + +I+
Sbjct: 209 MYVVGLVLTILTYVFFCASSCSFNQAINTIN 239


>SPAC2E1P5.05 |||U3 snoRNP-associated protein Rrp9
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 524

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 14/43 (32%), Positives = 19/43 (44%), Gaps = 2/43 (4%)
 Frame = +2

Query: 443 ENDHIMEIACLVTDAQLNVVATG--PDIVINLPEVTLNKMNNW 565
           ENDH+ EI CL        + TG     ++    VTL   + W
Sbjct: 204 ENDHVKEITCLAISNDGRWIVTGGLDHRIVIRDSVTLEPQHCW 246


>SPBC713.06 |adl1|lig3|DNA ligase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 774

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +2

Query: 287 YNMIKSTLSRSAITFLTRNLSMSPKIMMK 373
           YN++ +TL R  I  L  N+S+ P I +K
Sbjct: 378 YNILVATLLREGIENLKDNMSIRPGIPVK 406


>SPBC83.11 |||triose phosphate transporter|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 434

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 22/88 (25%), Positives = 40/88 (45%)
 Frame = -3

Query: 591 PVSPCWTLHQLFILFKVTSGRFITISGPVATTFSCASVTRHAISIMWSFSMSSPVISRSI 412
           PVS   T+  L  LF V + RF+      A T+         +++  SF +S+ ++   +
Sbjct: 95  PVSTVHTVKALSPLFTVLAYRFMFRHVYSAMTYFSLVPLTFGVTLACSFELSADIVG-LL 153

Query: 411 HTIL*AMSTLVFFFIIIFGDMDKLRVKN 328
           + ++   ST +F    IFG    +  K+
Sbjct: 154 YALI---STCIFVSQNIFGSKIFMEAKS 178


>SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1147

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -3

Query: 267 NRLYMLNVTACHYTKKNEINSCTTLHYIHTIS 172
           N LY+LN ++  + K N   +  +  Y HTIS
Sbjct: 163 NSLYLLNTSSLVWQKANASGARPSGRYGHTIS 194


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,532,402
Number of Sequences: 5004
Number of extensions: 53066
Number of successful extensions: 131
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 267622334
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)