Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10e01f
(611 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_03_0150 - 15750329-15750450,15751554-15751644,15751967-157520... 85 3e-17
04_03_0268 - 13663387-13663505,13663935-13664025,13664788-136648... 50 1e-06
03_06_0179 - 32171712-32171780,32171861-32171920,32172096-321721... 31 0.95
04_04_0491 - 25605560-25605684,25605826-25605928,25606026-256075... 30 1.3
03_05_0187 - 21751374-21752631,21752958-21753399,21753914-21753962 30 1.3
03_04_0151 - 17729023-17729372,17729441-17730623,17730723-177309... 29 3.8
03_01_0626 + 4596022-4596462,4596549-4596667,4596745-4596801,459... 28 6.7
02_02_0522 - 11161385-11161537,11162513-11162668,11164176-111642... 28 6.7
>02_03_0150 -
15750329-15750450,15751554-15751644,15751967-15752053,
15752605-15752660,15752812-15752893,15753141-15753217,
15754028-15754138,15754744-15754906,15755375-15755433,
15755882-15756011
Length = 325
Score = 85.4 bits (202), Expect = 3e-17
Identities = 35/71 (49%), Positives = 48/71 (67%)
Frame = +2
Query: 389 DIAQRIVWMDLEMTGLDIENDHIMEIACLVTDAQLNVVATGPDIVINLPEVTLNKMNNWC 568
D +VW+DLEMTGLD+ D I+EIAC++TD +L GPD+VIN + L+ M+ WC
Sbjct: 141 DYQMPLVWIDLEMTGLDVAKDRILEIACIITDGKLTKQIEGPDLVINQKKDLLDNMDEWC 200
Query: 569 KVQHGETGLTE 601
K H +GLT+
Sbjct: 201 KTHHAASGLTQ 211
>04_03_0268 -
13663387-13663505,13663935-13664025,13664788-13664874,
13665849-13665904,13666788-13666841,13667413-13667523,
13668293-13668419
Length = 214
Score = 50.0 bits (114), Expect = 1e-06
Identities = 20/32 (62%), Positives = 26/32 (81%)
Frame = +2
Query: 389 DIAQRIVWMDLEMTGLDIENDHIMEIACLVTD 484
D + +VW+DLEMTGLDI D I+EIAC++TD
Sbjct: 66 DYDKPLVWIDLEMTGLDITKDRILEIACIITD 97
>03_06_0179 -
32171712-32171780,32171861-32171920,32172096-32172166,
32172246-32172273,32172356-32172502,32172626-32172904,
32172949-32173011,32173137-32173247,32173605-32173658,
32173761-32173949,32174275-32174670
Length = 488
Score = 30.7 bits (66), Expect = 0.95
Identities = 17/55 (30%), Positives = 27/55 (49%)
Frame = +2
Query: 446 NDHIMEIACLVTDAQLNVVATGPDIVINLPEVTLNKMNNWCKVQHGETGLTEAGL 610
N H+ E+A L TD + +V + L E+ L + + K G+TE+GL
Sbjct: 341 NPHVKEVAKLATDLESGMVTISAQVEAELAELPLEERVEYLK----SLGVTESGL 391
>04_04_0491 - 25605560-25605684,25605826-25605928,25606026-25607592,
25608694-25610198
Length = 1099
Score = 30.3 bits (65), Expect = 1.3
Identities = 19/52 (36%), Positives = 31/52 (59%)
Frame = -1
Query: 551 CLKSLQVDL*LYRDLSPLHLAVHLSQDTLFPLCGHFQCQVLSFQDPSIQSSE 396
C K L V L + +SP H ++ L ++ + + G C+VL FQ+PS+Q S+
Sbjct: 978 CHKKL-VSLRKLQHISPFH-SLRLRKELVQKVSG---CEVLPFQNPSVQDSQ 1024
>03_05_0187 - 21751374-21752631,21752958-21753399,21753914-21753962
Length = 582
Score = 30.3 bits (65), Expect = 1.3
Identities = 16/42 (38%), Positives = 22/42 (52%)
Frame = -3
Query: 555 ILFKVTSGRFITISGPVATTFSCASVTRHAISIMWSFSMSSP 430
+L V SG F +S VAT C TRHA + + +S +P
Sbjct: 257 VLSSVLSGFFQEVSSLVATGSPCTDTTRHAHLLDFLYSNMAP 298
>03_04_0151 -
17729023-17729372,17729441-17730623,17730723-17730953,
17730975-17731036,17732085-17732157,17737044-17737834,
17737932-17738004
Length = 920
Score = 28.7 bits (61), Expect = 3.8
Identities = 17/45 (37%), Positives = 23/45 (51%)
Frame = -3
Query: 540 TSGRFITISGPVATTFSCASVTRHAISIMWSFSMSSPVISRSIHT 406
TSG T G + AS H+ ++ S+SSP ISRS+ T
Sbjct: 741 TSGNSST-GGAAKQEATTASTEAHSAKVVLKKSLSSPAISRSLTT 784
>03_01_0626 +
4596022-4596462,4596549-4596667,4596745-4596801,
4596921-4597159,4597261-4597379,4597488-4597574,
4597673-4597720
Length = 369
Score = 27.9 bits (59), Expect = 6.7
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = -1
Query: 494 LAVHLSQDTLFPLCGHFQCQVLSFQDPSIQSSELC 390
+ +HLS LFPL QCQ+ +F + LC
Sbjct: 51 IPLHLSFAFLFPLQRFLQCQMKNFASAAASGVALC 85
>02_02_0522 -
11161385-11161537,11162513-11162668,11164176-11164298,
11164404-11164466,11164512-11164577,11165128-11165232,
11165336-11165435,11165520-11165590,11166037-11166093,
11167215-11167292,11167367-11167441,11168490-11168540,
11169015-11169094,11169560-11169660,11169749-11169810,
11170084-11170590
Length = 615
Score = 27.9 bits (59), Expect = 6.7
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +1
Query: 283 YIQHDKIYVITKCNNVLNS*FVHVSENNDEK 375
+++H + YV+TK N L + + E ND K
Sbjct: 444 FVKHSRSYVLTKPKNALGRQYTKLFEMNDVK 474
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,577,234
Number of Sequences: 37544
Number of extensions: 276830
Number of successful extensions: 571
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 566
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 571
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1466594128
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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