Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10e01f
         (611 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_12798| Best HMM Match : Ammonium_transp (HMM E-Value=0)             31   0.97 
SB_21704| Best HMM Match : Ammonium_transp (HMM E-Value=0)             31   0.97 
SB_21765| Best HMM Match : Exonuc_X-T (HMM E-Value=1.9e-09)            30   1.3  
SB_15216| Best HMM Match : Exonuc_X-T (HMM E-Value=1.9e-09)            30   1.3  
SB_25375| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.7  
SB_56545| Best HMM Match : Exonuc_X-T (HMM E-Value=1.2e-09)            29   2.2  
SB_49723| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.2  
SB_44592| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.0  
SB_30318| Best HMM Match : 7tm_1 (HMM E-Value=3.9e-07)                 29   3.0  
SB_53873| Best HMM Match : Fibrinogen_C (HMM E-Value=0)                29   3.9  
SB_15999| Best HMM Match : LRR_1 (HMM E-Value=1.7e-21)                 29   3.9  
SB_53740| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0)             28   5.2  
SB_41077| Best HMM Match : LRR_1 (HMM E-Value=1.8e-05)                 28   6.9  
SB_36995| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.9  
SB_33731| Best HMM Match : Exonuc_X-T (HMM E-Value=6.2e-06)            28   6.9  
SB_31540| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.9  

>SB_12798| Best HMM Match : Ammonium_transp (HMM E-Value=0)
          Length = 492

 Score = 30.7 bits (66), Expect = 0.97
 Identities = 15/52 (28%), Positives = 27/52 (51%)
 Frame = -3

Query: 606 PASVNPVSPCWTLHQLFILFKVTSGRFITISGPVATTFSCASVTRHAISIMW 451
           P ++ P    W L   FI+F + SG  +  SG V+       +T++AI +++
Sbjct: 18  PMNLRPDDATWILTSAFIIFTMQSGFGLLESGMVSRKNETNIMTKNAIDVIY 69


>SB_21704| Best HMM Match : Ammonium_transp (HMM E-Value=0)
          Length = 492

 Score = 30.7 bits (66), Expect = 0.97
 Identities = 15/52 (28%), Positives = 27/52 (51%)
 Frame = -3

Query: 606 PASVNPVSPCWTLHQLFILFKVTSGRFITISGPVATTFSCASVTRHAISIMW 451
           P ++ P    W L   FI+F + SG  +  SG V+       +T++AI +++
Sbjct: 18  PMNLRPDDATWILTSAFIIFTMQSGFGLLESGMVSRKNETNIMTKNAIDVIY 69


>SB_21765| Best HMM Match : Exonuc_X-T (HMM E-Value=1.9e-09)
          Length = 460

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = +2

Query: 407 VWMDLEMTGLDIENDHIMEIAC 472
           V  D E TGLD  ND I+++AC
Sbjct: 157 VMFDTETTGLDTSNDDIIQLAC 178


>SB_15216| Best HMM Match : Exonuc_X-T (HMM E-Value=1.9e-09)
          Length = 415

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = +2

Query: 407 VWMDLEMTGLDIENDHIMEIAC 472
           V  D E TGLD  ND I+++AC
Sbjct: 112 VMFDTETTGLDTSNDDIIQLAC 133


>SB_25375| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 147

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = -3

Query: 237 CHYTKKNEINSCTTLHYIHTISEIYLHQYYLY*SIIITT 121
           C++T  N  N   T+ Y HT++ +Y H   +    I+TT
Sbjct: 82  CNHTLTNMCNHTLTIMYNHTLTNMYNHTLTIMYKHILTT 120


>SB_56545| Best HMM Match : Exonuc_X-T (HMM E-Value=1.2e-09)
          Length = 416

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = +2

Query: 407 VWMDLEMTGLDIENDHIMEIAC 472
           V  D E TGLD  ND I+++AC
Sbjct: 112 VMFDTETTGLDTSNDVIIQLAC 133


>SB_49723| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 319

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = +2

Query: 407 VWMDLEMTGLDIENDHIMEIAC 472
           V  D E TGLD  ND I+++AC
Sbjct: 20  VMFDTETTGLDTSNDVIIQLAC 41


>SB_44592| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 185

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 17/85 (20%), Positives = 41/85 (48%)
 Frame = +2

Query: 287 YNMIKSTLSRSAITFLTRNLSMSPKIMMKKNTKVDIAQRIVWMDLEMTGLDIENDHIMEI 466
           Y ++K    +S ++ +     +  K  MKK + +D +  I+   L+   +  ++  +++ 
Sbjct: 23  YFLLKEAEKQSQVSKIQYQQKIMEKESMKKMSVIDGSVIIIHSFLDSPEVTYDSPEVIDD 82

Query: 467 ACLVTDAQLNVVATGPDIVINLPEV 541
           +  V D    V+   P+++ + PEV
Sbjct: 83  SPEVIDDSPEVIDDSPEVIDDSPEV 107


>SB_30318| Best HMM Match : 7tm_1 (HMM E-Value=3.9e-07)
          Length = 546

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = +3

Query: 180 YVCNVMLYNY*FHFFLCNDMQLRSTCKVYFTLKQLHTT 293
           YV N MLY     F++ N M   +   +Y T   L+TT
Sbjct: 17  YVTNAMLYTTNAMFYMTNAMLYMTNAMLYMTNAMLYTT 54


>SB_53873| Best HMM Match : Fibrinogen_C (HMM E-Value=0)
          Length = 660

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -3

Query: 525 ITISGPVATTFSCASVTRHAISIMWS 448
           +T++   A TF+C+S T    +IMWS
Sbjct: 192 LTVNENAAATFTCSSTTPGKATIMWS 217


>SB_15999| Best HMM Match : LRR_1 (HMM E-Value=1.7e-21)
          Length = 791

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 17/74 (22%), Positives = 37/74 (50%)
 Frame = +2

Query: 341 NLSMSPKIMMKKNTKVDIAQRIVWMDLEMTGLDIENDHIMEIACLVTDAQLNVVATGPDI 520
           NL +  ++ +++N K+ I  R++   + +  LDI ++HI  +   +   + N+       
Sbjct: 243 NLKLLERLSLREN-KIKILPRVIGQLVHLVTLDISHNHIENLPAGID--EFNIEGNN--- 296

Query: 521 VINLPEVTLNKMNN 562
           +  LPE  L+ + N
Sbjct: 297 IAELPEKLLSSLKN 310


>SB_53740| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0)
          Length = 1980

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 15/53 (28%), Positives = 27/53 (50%)
 Frame = -3

Query: 591  PVSPCWTLHQLFILFKVTSGRFITISGPVATTFSCASVTRHAISIMWSFSMSS 433
            PVS C +L  LF+L  +   R+  ++ P+A  + C    +  I  ++S  + S
Sbjct: 1637 PVSVCLSLASLFLLVAMAIDRYFAVTRPLA--YKCLVTKQRIIWAIFSIVLYS 1687


>SB_41077| Best HMM Match : LRR_1 (HMM E-Value=1.8e-05)
          Length = 1200

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 14/54 (25%), Positives = 29/54 (53%)
 Frame = +1

Query: 220 FFCVMTCSYVQHVKSISH*NNYIQHDKIYVITKCNNVLNS*FVHVSENNDEKKY 381
           F+C M C +++ V+S S  N +   D + ++  C  +    + H  ++ND K++
Sbjct: 564 FYCFMVCVFLRSVRSNSLRNPFCLPDSVTML-YCALIKVFMYNHSGKSNDVKEF 616


>SB_36995| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 574

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 13/35 (37%), Positives = 23/35 (65%)
 Frame = -3

Query: 375 FFIIIFGDMDKLRVKNVIALRDNVDFIMLYVIVLM 271
           FFII   D+D + + NV+ +   VD I++ VI+++
Sbjct: 76  FFIITIPDVDNIILINVVVI--TVDIIVIIVIIII 108


>SB_33731| Best HMM Match : Exonuc_X-T (HMM E-Value=6.2e-06)
          Length = 275

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 11/21 (52%), Positives = 16/21 (76%)
 Frame = +2

Query: 413 MDLEMTGLDIENDHIMEIACL 475
           +D+E TGL   ND I++IAC+
Sbjct: 30  LDVETTGLSKLNDRIVQIACV 50


>SB_31540| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 400

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = -3

Query: 582 PCWTLHQLFILFKVTSGRFITISGPVATTFSCASVT 475
           P  T H LFI+F +TS   + IS  + TT +  ++T
Sbjct: 183 PTATSHHLFIIFTITSTTIVIIS-TINTTSTVITIT 217


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,385,388
Number of Sequences: 59808
Number of extensions: 383734
Number of successful extensions: 976
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 857
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 973
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1499981500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)