Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10e01f
         (611 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    25   0.58 
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    22   4.1  
DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate r...    22   5.4  
AB006152-1|BAA24504.1|  178|Apis mellifera inositol 1,4,5-tripho...    22   5.4  
EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate isome...    21   9.5  
DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor pro...    21   9.5  
DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor pro...    21   9.5  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    21   9.5  
AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled rec...    21   9.5  

>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 25.0 bits (52), Expect = 0.58
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +2

Query: 353 SPKIMMKKNTKVDIAQRIVWMDLEMTGLDIENDHI 457
           S K+M+ + T  DI  R + M LE   ++ EN+ +
Sbjct: 19  SSKVMLTRGTVNDIVSRNITMVLENLLMNYENNQL 53


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = -3

Query: 204 CTTLHYIHTISEIY 163
           C TLH+ H   EIY
Sbjct: 467 CNTLHHWHHCPEIY 480


>DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate
           receptor protein.
          Length = 322

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 8/25 (32%), Positives = 12/25 (48%)
 Frame = -2

Query: 427 HFKIHPYNPLSYVNFSIFFHHYFRR 353
           H  +H Y PL      + F H+ +R
Sbjct: 133 HLAMHDYPPLVSGALHLLFRHFSQR 157


>AB006152-1|BAA24504.1|  178|Apis mellifera inositol
           1,4,5-triphosphate recepter protein.
          Length = 178

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 8/25 (32%), Positives = 12/25 (48%)
 Frame = -2

Query: 427 HFKIHPYNPLSYVNFSIFFHHYFRR 353
           H  +H Y PL      + F H+ +R
Sbjct: 101 HLAMHDYPPLVSGALHLLFRHFSQR 125


>EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate
           isomerase protein.
          Length = 247

 Score = 21.0 bits (42), Expect = 9.5
 Identities = 9/37 (24%), Positives = 16/37 (43%)
 Frame = +2

Query: 464 IACLVTDAQLNVVATGPDIVINLPEVTLNKMNNWCKV 574
           IAC+    +        ++V    +   NK+N+W  V
Sbjct: 123 IACIGEKLEEREAGKTDEVVFRQTKAIANKINSWDNV 159


>DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 21.0 bits (42), Expect = 9.5
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -2

Query: 406 NPLSYVNFSIFFHHYFRR 353
           NPL Y  F++ +   FRR
Sbjct: 377 NPLIYTIFNLDYRRAFRR 394


>DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 21.0 bits (42), Expect = 9.5
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -2

Query: 406 NPLSYVNFSIFFHHYFRR 353
           NPL Y  F++ +   FRR
Sbjct: 377 NPLIYTIFNLDYRRAFRR 394


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 21.0 bits (42), Expect = 9.5
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -1

Query: 458 LCGHFQCQVLSFQDPSIQSS 399
           L GH     L F+DP ++S+
Sbjct: 507 LKGHAHWLTLHFKDPKVESA 526


>AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled
           receptor protein.
          Length = 399

 Score = 21.0 bits (42), Expect = 9.5
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -2

Query: 406 NPLSYVNFSIFFHHYFRR 353
           NPL Y  F++ +   FRR
Sbjct: 377 NPLIYTIFNLDYRRAFRR 394


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 175,156
Number of Sequences: 438
Number of extensions: 3986
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18093444
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)