Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10e01f
         (611 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g26970.1 68415.m03235 exonuclease family protein contains exo...    85   5e-17
At5g44980.1 68418.m05516 F-box family protein contains F-box dom...    29   3.2  
At1g09930.1 68414.m01117 oligopeptide transporter OPT family pro...    27   7.4  
At5g20750.1 68418.m02466 Ulp1 protease family protein contains P...    27   9.8  

>At2g26970.1 68415.m03235 exonuclease family protein contains
           exonuclease domain, Pfam:PF00929
          Length = 222

 Score = 84.6 bits (200), Expect = 5e-17
 Identities = 34/71 (47%), Positives = 51/71 (71%)
 Frame = +2

Query: 389 DIAQRIVWMDLEMTGLDIENDHIMEIACLVTDAQLNVVATGPDIVINLPEVTLNKMNNWC 568
           D  Q +VW+DLEMTGL++E D I+EIAC++T+  L     GPD+V+   +  L+KM++WC
Sbjct: 41  DYKQPLVWIDLEMTGLNVEVDRILEIACIITNGDLTQSVEGPDLVVRQTKDCLDKMDDWC 100

Query: 569 KVQHGETGLTE 601
           +  HG +GLT+
Sbjct: 101 QTHHGASGLTK 111


>At5g44980.1 68418.m05516 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 435

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 17/53 (32%), Positives = 27/53 (50%)
 Frame = +2

Query: 434 LDIENDHIMEIACLVTDAQLNVVATGPDIVINLPEVTLNKMNNWCKVQHGETG 592
           +D +  +I +   LV+    NV     D V++LP + + K+ N C   HGE G
Sbjct: 120 VDFKRQNIYKSKTLVSLKLHNVELKNSDFVVSLPCLKILKLENIC---HGEDG 169


>At1g09930.1 68414.m01117 oligopeptide transporter OPT family
           protein similar to SP|P40900 Sexual differentiation
           process protein isp4 {Schizosaccharomyces pombe};
           contains Pfam profile PF03169: OPT oligopeptide
           transporter protein
          Length = 734

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = -2

Query: 157 PILSILIYNNHDQVY*IALYINNTLLYIMKNLEQFGHV 44
           PI S  +++   Q+Y I+  +NN     M+N +Q G V
Sbjct: 317 PIFSSDLFDKQGQLYNISTIVNNKFELDMENYQQQGRV 354


>At5g20750.1 68418.m02466 Ulp1 protease family protein contains Pfam
           profile PF02902: Ulp1 protease family, C-terminal
           catalytic domain
          Length = 944

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
 Frame = +2

Query: 455 IMEIACLVTDAQLNVVAT-GPDIVINLPEVTLNKMNNWCKVQH 580
           ++E+ C   DA L+V  T  P +V+N  E   +K N+  KV+H
Sbjct: 316 VLEVEC---DANLSVAYTLTPSVVLNENEFAWSKENDDPKVEH 355


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,496,057
Number of Sequences: 28952
Number of extensions: 248509
Number of successful extensions: 523
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 514
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 523
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1226538000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)