Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10d24r
(702 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_48466| Best HMM Match : Pro_isomerase (HMM E-Value=0) 233 1e-61
SB_31360| Best HMM Match : No HMM Matches (HMM E-Value=.) 224 5e-59
SB_24678| Best HMM Match : No HMM Matches (HMM E-Value=.) 176 1e-44
SB_24677| Best HMM Match : No HMM Matches (HMM E-Value=.) 168 4e-42
SB_51693| Best HMM Match : Pro_isomerase (HMM E-Value=3.5e-19) 98 7e-21
SB_19540| Best HMM Match : Pro_isomerase (HMM E-Value=1.5e-23) 91 6e-19
SB_24676| Best HMM Match : No HMM Matches (HMM E-Value=.) 89 3e-18
SB_25950| Best HMM Match : Pro_isomerase (HMM E-Value=2.5e-24) 89 4e-18
SB_32917| Best HMM Match : Pro_isomerase (HMM E-Value=5.1e-23) 86 2e-17
SB_3070| Best HMM Match : Pro_isomerase (HMM E-Value=2.3e-05) 77 1e-14
SB_23239| Best HMM Match : No HMM Matches (HMM E-Value=.) 52 5e-07
SB_39222| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 6e-04
SB_21081| Best HMM Match : Pro_isomerase (HMM E-Value=0.11) 38 0.006
SB_6440| Best HMM Match : DUF638 (HMM E-Value=6.2) 37 0.014
SB_40118| Best HMM Match : DREPP (HMM E-Value=0.085) 33 0.30
SB_24760| Best HMM Match : PT (HMM E-Value=0.17) 31 0.68
SB_6387| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.68
SB_3760| Best HMM Match : SVA (HMM E-Value=0.19) 30 1.6
SB_24028| Best HMM Match : DNA_photolyase (HMM E-Value=1.3e-39) 30 2.1
SB_19447| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.8
SB_51093| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.6
SB_26973| Best HMM Match : DUF471 (HMM E-Value=1.1) 28 6.4
SB_10643| Best HMM Match : ShTK (HMM E-Value=2.9e-23) 28 8.4
SB_43689| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.4
SB_15696| Best HMM Match : DUF282 (HMM E-Value=2.5) 28 8.4
>SB_48466| Best HMM Match : Pro_isomerase (HMM E-Value=0)
Length = 298
Score = 233 bits (569), Expect = 1e-61
Identities = 101/134 (75%), Positives = 116/134 (86%)
Frame = -3
Query: 700 TCENFRALCTGEKGFGYKGSIFHRVIPNFMLQGGDFTNHNGTGGKSIYGNKFEDENFTLK 521
T ENFR LCT EKGFGYKGS FHR+IP FM QGGDFT HNGTGGKSIYG KFEDENF LK
Sbjct: 165 TAENFRCLCTHEKGFGYKGSSFHRIIPQFMCQGGDFTKHNGTGGKSIYGAKFEDENFVLK 224
Query: 520 HTGPGVLSMANAGADTNGSQFFITTVKTSWLDGRHVVFGNVVEGMEVVKQIETFGSQSGK 341
HTG GVLSMAN+G +TNGSQFF+TT KT WLDG+HVVFGNV+EG +VV+++E GSQSGK
Sbjct: 225 HTGAGVLSMANSGPNTNGSQFFLTTEKTDWLDGKHVVFGNVIEGFDVVRKMEAVGSQSGK 284
Query: 340 TSKRIVIKDCGQIA 299
SK++VI DCG+++
Sbjct: 285 ASKKVVIDDCGELS 298
>SB_31360| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 235
Score = 224 bits (548), Expect = 5e-59
Identities = 101/133 (75%), Positives = 112/133 (84%)
Frame = -3
Query: 700 TCENFRALCTGEKGFGYKGSIFHRVIPNFMLQGGDFTNHNGTGGKSIYGNKFEDENFTLK 521
T ENFRALCTGEKGFGYKGS FHRVIP FM QGGDFT +GTGGKSIYG KF DENF LK
Sbjct: 31 TAENFRALCTGEKGFGYKGSSFHRVIPGFMCQGGDFTRGDGTGGKSIYGAKFADENFNLK 90
Query: 520 HTGPGVLSMANAGADTNGSQFFITTVKTSWLDGRHVVFGNVVEGMEVVKQIETFGSQSGK 341
HTGPG+LSMANAG TNGSQFF+ T KTSWLDG+HVVFG+V +GM+VVK+IE GS SGK
Sbjct: 91 HTGPGILSMANAGPGTNGSQFFLCTAKTSWLDGKHVVFGSVKDGMDVVKKIEKVGSDSGK 150
Query: 340 TSKRIVIKDCGQI 302
TSK++VI D +
Sbjct: 151 TSKKVVIADSASV 163
>SB_24678| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 201
Score = 176 bits (429), Expect = 1e-44
Identities = 80/112 (71%), Positives = 91/112 (81%)
Frame = -3
Query: 700 TCENFRALCTGEKGFGYKGSIFHRVIPNFMLQGGDFTNHNGTGGKSIYGNKFEDENFTLK 521
T NF AL E+GFGYK SIFHRVI NFM+QGGDFTN +GTGG SIYG F+DENF LK
Sbjct: 54 TVANFVALADKEQGFGYKDSIFHRVIKNFMIQGGDFTNKDGTGGYSIYGKYFDDENFNLK 113
Query: 520 HTGPGVLSMANAGADTNGSQFFITTVKTSWLDGRHVVFGNVVEGMEVVKQIE 365
H GPG L MANAG +TNGSQF+ITT+KTSWLDG H FG V+EGM+VV++IE
Sbjct: 114 HYGPGWLCMANAGKNTNGSQFYITTIKTSWLDGSHTCFGKVLEGMDVVRRIE 165
>SB_24677| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 253
Score = 168 bits (408), Expect = 4e-42
Identities = 78/101 (77%), Positives = 85/101 (84%), Gaps = 2/101 (1%)
Frame = -3
Query: 676 CT--GEKGFGYKGSIFHRVIPNFMLQGGDFTNHNGTGGKSIYGNKFEDENFTLKHTGPGV 503
CT +KGFGYK SIFHRVI +FM+QGGDFT +GTGGKSIYG KF DENF L+H G G
Sbjct: 79 CTIESQKGFGYKNSIFHRVIQDFMIQGGDFTKGDGTGGKSIYGQKFADENFKLQHYGAGW 138
Query: 502 LSMANAGADTNGSQFFITTVKTSWLDGRHVVFGNVVEGMEV 380
LSMANAG DTNGSQFFITTVKT WLDGRHVVFG V++GMEV
Sbjct: 139 LSMANAGKDTNGSQFFITTVKTPWLDGRHVVFGKVLKGMEV 179
>SB_51693| Best HMM Match : Pro_isomerase (HMM E-Value=3.5e-19)
Length = 99
Score = 97.9 bits (233), Expect = 7e-21
Identities = 45/73 (61%), Positives = 57/73 (78%), Gaps = 1/73 (1%)
Frame = -3
Query: 583 NGTGGKSIYGNKFEDE-NFTLKHTGPGVLSMANAGADTNGSQFFITTVKTSWLDGRHVVF 407
+GTGG+SI+G +FEDE + L+H P +SMANAG +TNGSQFFIT V T WLD +H VF
Sbjct: 2 DGTGGESIWGGEFEDEFHRNLRHDRPYTVSMANAGPNTNGSQFFITVVPTPWLDNKHTVF 61
Query: 406 GNVVEGMEVVKQI 368
G VV+GM+V +QI
Sbjct: 62 GRVVKGMDVAQQI 74
>SB_19540| Best HMM Match : Pro_isomerase (HMM E-Value=1.5e-23)
Length = 741
Score = 91.5 bits (217), Expect = 6e-19
Identities = 40/75 (53%), Positives = 55/75 (73%)
Frame = -3
Query: 523 KHTGPGVLSMANAGADTNGSQFFITTVKTSWLDGRHVVFGNVVEGMEVVKQIETFGSQSG 344
+H PG+LSMAN+G +TNGSQFFITTV T LDGRHVVFG V++GM+VV+++E
Sbjct: 188 EHDKPGLLSMANSGPNTNGSQFFITTVPTPHLDGRHVVFGKVLKGMDVVRELEATPVDDS 247
Query: 343 KTSKRIVIKDCGQIA 299
+I++CG++A
Sbjct: 248 SPKSPCIIEECGELA 262
>SB_24676| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 76
Score = 89.0 bits (211), Expect = 3e-18
Identities = 40/65 (61%), Positives = 49/65 (75%)
Frame = -3
Query: 496 MANAGADTNGSQFFITTVKTSWLDGRHVVFGNVVEGMEVVKQIETFGSQSGKTSKRIVIK 317
MANAG DTNGSQFFITTVKTSWLDG+HVVFG V+EGM+VV+++E + K +I
Sbjct: 1 MANAGKDTNGSQFFITTVKTSWLDGKHVVFGKVLEGMDVVRKLENVNVKGSTPVKTCMID 60
Query: 316 DCGQI 302
D G +
Sbjct: 61 DSGTL 65
>SB_25950| Best HMM Match : Pro_isomerase (HMM E-Value=2.5e-24)
Length = 145
Score = 88.6 bits (210), Expect = 4e-18
Identities = 39/91 (42%), Positives = 57/91 (62%)
Frame = -3
Query: 580 GTGGKSIYGNKFEDENFTLKHTGPGVLSMANAGADTNGSQFFITTVKTSWLDGRHVVFGN 401
G GG+S+YG FEDE+F++ H GV+ MAN G TNGSQF+IT W+D ++V FG
Sbjct: 46 GIGGESVYGPLFEDEDFSVAHNRRGVVGMANKGRHTNGSQFYITLQPAPWMDTKYVAFGQ 105
Query: 400 VVEGMEVVKQIETFGSQSGKTSKRIVIKDCG 308
V+EG+ V+ +E + + + + DCG
Sbjct: 106 VIEGLNVLDVLEGQETFNERPKVECRVADCG 136
>SB_32917| Best HMM Match : Pro_isomerase (HMM E-Value=5.1e-23)
Length = 378
Score = 86.2 bits (204), Expect = 2e-17
Identities = 44/95 (46%), Positives = 62/95 (65%), Gaps = 1/95 (1%)
Frame = -3
Query: 583 NGTGGKSIYGNKFEDENFTLKHTGPGVLSMANAGADTNGSQFFITTVKTSWLDGRHVVFG 404
NGTGG+SIYG F DE F KH P +LSMAN G +TNGSQFFI HVVFG
Sbjct: 25 NGTGGESIYGGTFGDECFEFKHERPMLLSMANRGPNTNGSQFFII----------HVVFG 74
Query: 403 NVVEGMEVVKQIETF-GSQSGKTSKRIVIKDCGQI 302
+V++G E+V+QIE+ ++ + + + + +CG++
Sbjct: 75 HVIQGEELVRQIESLPTNEKNRPNADVKVSNCGEL 109
>SB_3070| Best HMM Match : Pro_isomerase (HMM E-Value=2.3e-05)
Length = 49
Score = 77.4 bits (182), Expect = 1e-14
Identities = 33/46 (71%), Positives = 41/46 (89%)
Frame = -3
Query: 505 VLSMANAGADTNGSQFFITTVKTSWLDGRHVVFGNVVEGMEVVKQI 368
+LSMANAG TNGSQFF+ T KTSWLDG+HVVFG+V +GM+VVK++
Sbjct: 2 ILSMANAGPGTNGSQFFLCTAKTSWLDGKHVVFGSVKDGMDVVKKM 47
>SB_23239| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 251
Score = 52.0 bits (119), Expect = 5e-07
Identities = 38/101 (37%), Positives = 52/101 (51%), Gaps = 6/101 (5%)
Frame = -3
Query: 652 YKGSIFHRVIPNFMLQGGDFTNHNGTGGKSIYGNKFEDENFTLKHTGPGVLSMANAGA-D 476
Y G+ FHRVIP FM+QGG F + + ++E H G L+MA D
Sbjct: 60 YAGTQFHRVIPGFMVQGGGF---DADMQQKDTQAPIKNEADNGLHNVRGTLAMARTQVRD 116
Query: 475 TNGSQFFITTVKTSWLDG-----RHVVFGNVVEGMEVVKQI 368
+ SQFFI ++LD + VFG VV+GM+VV +I
Sbjct: 117 SATSQFFINHKDNAFLDHGSRDFGYAVFGKVVKGMDVVDKI 157
>SB_39222| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1651
Score = 41.5 bits (93), Expect = 6e-04
Identities = 19/39 (48%), Positives = 25/39 (64%)
Frame = -3
Query: 520 HTGPGVLSMANAGADTNGSQFFITTVKTSWLDGRHVVFG 404
H G +SMAN G ++NGSQFFI K LD ++ +FG
Sbjct: 301 HNARGTVSMANNGPNSNGSQFFICYGKQPHLDMKYTMFG 339
>SB_21081| Best HMM Match : Pro_isomerase (HMM E-Value=0.11)
Length = 48
Score = 38.3 bits (85), Expect = 0.006
Identities = 20/32 (62%), Positives = 20/32 (62%), Gaps = 8/32 (25%)
Frame = -3
Query: 700 TCENFRALCTGEKGFG--------YKGSIFHR 629
T ENFRALCTGEKG G YKG FHR
Sbjct: 16 TAENFRALCTGEKGIGPSTGKPLHYKGCPFHR 47
>SB_6440| Best HMM Match : DUF638 (HMM E-Value=6.2)
Length = 175
Score = 37.1 bits (82), Expect = 0.014
Identities = 14/40 (35%), Positives = 29/40 (72%), Gaps = 1/40 (2%)
Frame = -3
Query: 418 HVVFGNVVEGMEVVKQIETF-GSQSGKTSKRIVIKDCGQI 302
HVVFG+V++G E+V+QIE+ ++ + + + + +CG++
Sbjct: 3 HVVFGHVIQGEELVRQIESLPTNEKNRPNADVKVSNCGEL 42
>SB_40118| Best HMM Match : DREPP (HMM E-Value=0.085)
Length = 512
Score = 32.7 bits (71), Expect = 0.30
Identities = 26/69 (37%), Positives = 35/69 (50%)
Frame = +2
Query: 308 TTVFDNDSLRGLPRLAAKGLNLLDNFHAFNNIPKDNMSAIQPGGLDSGDEELGTISISTG 487
T V +N + PR A +GL D F+ K+ MS I+PGG D +EE T S G
Sbjct: 431 TKVPENVQPKPKPRRAGEGLPHSDFKSGFSY--KEYMSGIRPGGPDMEEEEKATPQ-SNG 487
Query: 488 ISHGEDARS 514
+ E A+S
Sbjct: 488 DASDEKAQS 496
>SB_24760| Best HMM Match : PT (HMM E-Value=0.17)
Length = 422
Score = 31.5 bits (68), Expect = 0.68
Identities = 18/46 (39%), Positives = 20/46 (43%)
Frame = +3
Query: 378 TTSMPSTTFPKTTCLPSSQEVLTVVMKNWEPLVSAPALAMERTPGP 515
TT PST P T PS+ E +T WEP P PGP
Sbjct: 34 TTGEPSTWEPMTGA-PSTWEPMTGAPSTWEPWTDGPGPYPTDGPGP 78
Score = 31.1 bits (67), Expect = 0.90
Identities = 15/37 (40%), Positives = 19/37 (51%)
Frame = +3
Query: 405 PKTTCLPSSQEVLTVVMKNWEPLVSAPALAMERTPGP 515
P TT PS+ E +T WEP+ AP+ T GP
Sbjct: 32 PFTTGEPSTWEPMTGAPSTWEPMTGAPSTWEPWTDGP 68
>SB_6387| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 197
Score = 31.5 bits (68), Expect = 0.68
Identities = 14/47 (29%), Positives = 22/47 (46%)
Frame = +3
Query: 375 LTTSMPSTTFPKTTCLPSSQEVLTVVMKNWEPLVSAPALAMERTPGP 515
L+ + + FP TT P + + T + EPL+ P +R P P
Sbjct: 13 LSATQLTAAFPTTTTTPVTTQTTTTDVSRTEPLIELPTAQEKRKPCP 59
>SB_3760| Best HMM Match : SVA (HMM E-Value=0.19)
Length = 259
Score = 30.3 bits (65), Expect = 1.6
Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 5/43 (11%)
Frame = +3
Query: 402 FPKTTCLPSSQE-----VLTVVMKNWEPLVSAPALAMERTPGP 515
FP+ + LP S E +LT++++N P ++APA + P P
Sbjct: 81 FPQPSLLPPSSESFDITLLTILLRNICPTLTAPATGWDALPAP 123
>SB_24028| Best HMM Match : DNA_photolyase (HMM E-Value=1.3e-39)
Length = 432
Score = 29.9 bits (64), Expect = 2.1
Identities = 12/56 (21%), Positives = 29/56 (51%)
Frame = -1
Query: 702 RRVKTSVPCALARKASVTRAPFSIVSSPISCCKEGTSPTITALGESPSTAISLKTR 535
+ + T+V C L ++ +S+ +SC + S T++ ++ ST +S +++
Sbjct: 369 KALSTTVSCQLKALSTTVSCELKALSTTVSCQSKALSTTVSCQSKALSTTVSCQSK 424
Score = 28.7 bits (61), Expect = 4.8
Identities = 12/56 (21%), Positives = 29/56 (51%)
Frame = -1
Query: 702 RRVKTSVPCALARKASVTRAPFSIVSSPISCCKEGTSPTITALGESPSTAISLKTR 535
+ + T+V C L ++ +S+ +SC + S T++ ++ ST +S +++
Sbjct: 358 KALSTTVSCELKALSTTVSCQLKALSTTVSCELKALSTTVSCQSKALSTTVSCQSK 413
Score = 27.9 bits (59), Expect = 8.4
Identities = 12/52 (23%), Positives = 26/52 (50%)
Frame = -1
Query: 702 RRVKTSVPCALARKASVTRAPFSIVSSPISCCKEGTSPTITALGESPSTAIS 547
+ + T+V C L ++ +S+ +SC + S T++ ++ ST +S
Sbjct: 380 KALSTTVSCELKALSTTVSCQSKALSTTVSCQSKALSTTVSCQSKALSTTVS 431
>SB_19447| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1110
Score = 29.5 bits (63), Expect = 2.8
Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 5/43 (11%)
Frame = +3
Query: 402 FPKTTCLPSSQE-----VLTVVMKNWEPLVSAPALAMERTPGP 515
FP+ LP S E +LT++++N P ++APA + P P
Sbjct: 81 FPQPPLLPPSSESFDITLLTILLRNICPTLTAPATGWDALPAP 123
>SB_51093| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 253
Score = 29.1 bits (62), Expect = 3.6
Identities = 18/62 (29%), Positives = 27/62 (43%)
Frame = +3
Query: 357 PKVSICLTTSMPSTTFPKTTCLPSSQEVLTVVMKNWEPLVSAPALAMERTPGPVCLRVKF 536
P+ TTS PST+ P+T ++ T N AP+ + RT + LR
Sbjct: 87 PRTGSTTTTSAPSTSTPRTGSTTTTSAPSTSTTSN--STTRAPSTSTPRTGSTITLRTST 144
Query: 537 SS 542
+S
Sbjct: 145 TS 146
>SB_26973| Best HMM Match : DUF471 (HMM E-Value=1.1)
Length = 674
Score = 28.3 bits (60), Expect = 6.4
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = -1
Query: 666 RKASVTRAPFSIVSSPISCCKEGTSPTITALGESP 562
+K R S V SC +EG SPT T+ G++P
Sbjct: 276 KKPFSNREAHSCVELCRSCVREGCSPTPTSRGDAP 310
>SB_10643| Best HMM Match : ShTK (HMM E-Value=2.9e-23)
Length = 2123
Score = 27.9 bits (59), Expect = 8.4
Identities = 16/57 (28%), Positives = 23/57 (40%)
Frame = +3
Query: 345 PDWLPKVSICLTTSMPSTTFPKTTCLPSSQEVLTVVMKNWEPLVSAPALAMERTPGP 515
P P + TT+ P TT P+TT P + T + P + P +T P
Sbjct: 1767 PPHSPPTTTTTTTTTPETTAPRTT-TPETTTPETTTPRTTTPETTKPRTTTPKTTTP 1822
>SB_43689| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 416
Score = 27.9 bits (59), Expect = 8.4
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = -1
Query: 132 IYFHALLVCSLLHFCYYIFISTSSLAVCLDLNNSHYR 22
+ F A+++C +LH IF L VC++L +Y+
Sbjct: 137 VEFKAMIICLILHLLLLIF----ELLVCINLGGRNYQ 169
>SB_15696| Best HMM Match : DUF282 (HMM E-Value=2.5)
Length = 128
Score = 27.9 bits (59), Expect = 8.4
Identities = 20/44 (45%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Frame = -1
Query: 681 PCALARKASVTRAPFSIVSSPISCCKE-GTSPTITA-LGESPST 556
PCALA SV+ P S VSS + G S TI+A SP T
Sbjct: 48 PCALATAPSVSEVPASTVSSSSPLRRSPGPSGTISASTSGSPRT 91
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,873,670
Number of Sequences: 59808
Number of extensions: 490600
Number of successful extensions: 1449
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 1301
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1444
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1841633001
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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