Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10d24f
(568 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC28F2.03 |ppi1|cyp2|cyclophilin family peptidyl-prolyl cis-tr... 247 8e-67
SPBP8B7.25 |cyp4||cyclophilin family peptidyl-prolyl cis-trans i... 209 2e-55
SPBC1709.04c |cyp3||cyclophilin family peptidyl-prolyl cis-trans... 184 8e-48
SPAC1B3.03c |wis2|cyp5|cyclophilin family peptidyl-prolyl cis-tr... 183 1e-47
SPAC57A10.03 |cyp1||cyclophilin family peptidyl-prolyl cis-trans... 150 1e-37
SPCC553.04 |cyp9||WD repeat containing cyclophilin family peptid... 122 4e-29
SPAC21E11.05c |cyp8||cyclophilin family peptidyl-prolyl cis-tran... 109 3e-25
SPBC16H5.05c |cyp7|cwf27|cyclophilin family peptidyl-prolyl cis-... 88 1e-18
SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating tra... 62 7e-11
SPCC285.13c |||nucleoporin Nup60 |Schizosaccharomyces pombe|chr ... 28 1.1
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 27 1.5
SPBP8B7.07c |set6||histone lysine methyltransferase Set6 |Schizo... 27 1.9
SPBC32C12.03c |ppk25||serine/threonine protein kinase Ppk25 |Sch... 27 1.9
SPAC110.03 |cdc42||Rho family GTPase Cdc42|Schizosaccharomyces p... 27 2.5
SPBC29A3.01 |||heavy metal ATPase |Schizosaccharomyces pombe|chr... 27 2.5
SPAC17D4.04 ||SPAC458.01|tRNA |Schizosaccharomyces pombe|chr 1||... 26 3.4
SPAP7G5.06 |||amino acid permease, unknown 4|Schizosaccharomyces... 26 4.4
SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|... 26 4.4
SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting pro... 26 4.4
SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces pom... 25 5.9
SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|ch... 25 7.7
SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharo... 25 7.7
SPCC24B10.17 |emp24||COPII-coated vesicle component Emp24 |Schiz... 25 7.7
SPAC30D11.01c ||SPAC56F8.01|alpha-glucosidase|Schizosaccharomyce... 25 7.7
>SPBC28F2.03 |ppi1|cyp2|cyclophilin family peptidyl-prolyl cis-trans
isomerase Cyp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 162
Score = 247 bits (605), Expect = 8e-67
Identities = 113/158 (71%), Positives = 125/158 (79%)
Frame = +2
Query: 71 FFDVTVDDAPLGKIVIELRSDVTPKTCENFRALCTGEKGFGYKGSIFHRVIPNFMLQGGD 250
FFDV + PLG+IV +L DV PKT NFRALCTGEKG+GY GS FHRVIP FMLQGGD
Sbjct: 5 FFDVIANGQPLGRIVFKLFDDVVPKTAANFRALCTGEKGYGYAGSTFHRVIPQFMLQGGD 64
Query: 251 FTNHNGTGGKSIYGNKFEDENFTLKHTGPGVLSMANAGADTNGSQFFITTVKTSWLDGRH 430
FT NGTGGKSIYG KF DENF LKH PG+LSMANAG +TNGSQFFITTV T WLDG+H
Sbjct: 65 FTRGNGTGGKSIYGEKFPDENFALKHNKPGLLSMANAGPNTNGSQFFITTVVTPWLDGKH 124
Query: 431 VVFGNVVEGMEVVKQIETFGSQSGKTSKRIVIKDCGQI 544
VVFG V EGM+VVK++E+ GS SG T RIVI CG +
Sbjct: 125 VVFGEVTEGMDVVKKVESLGSNSGATRARIVIDKCGTV 162
>SPBP8B7.25 |cyp4||cyclophilin family peptidyl-prolyl cis-trans
isomerase Cyp4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 201
Score = 209 bits (511), Expect = 2e-55
Identities = 96/146 (65%), Positives = 111/146 (76%)
Frame = +2
Query: 41 NTGKMSLPRVFFDVTVDDAPLGKIVIELRSDVTPKTCENFRALCTGEKGFGYKGSIFHRV 220
N G V+FD+ D LG++ I L PKT ENFRAL TGEKGFGY+GSIFHRV
Sbjct: 20 NRGPKVTDTVYFDLQQGDEFLGRVTIGLFGKTVPKTAENFRALATGEKGFGYEGSIFHRV 79
Query: 221 IPNFMLQGGDFTNHNGTGGKSIYGNKFEDENFTLKHTGPGVLSMANAGADTNGSQFFITT 400
IPNFM+QGGD T +GTGGKSIYG++F DENF L H PG+LSMANAG D+NGSQFFITT
Sbjct: 80 IPNFMIQGGDITKGDGTGGKSIYGSRFPDENFKLSHQRPGLLSMANAGPDSNGSQFFITT 139
Query: 401 VKTSWLDGRHVVFGNVVEGMEVVKQI 478
VKT WLDG HVVFG V+ G ++VK+I
Sbjct: 140 VKTPWLDGHHVVFGEVLSGYDIVKKI 165
>SPBC1709.04c |cyp3||cyclophilin family peptidyl-prolyl cis-trans
isomerase Cyp3 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 173
Score = 184 bits (448), Expect = 8e-48
Identities = 89/169 (52%), Positives = 115/169 (68%), Gaps = 8/169 (4%)
Frame = +2
Query: 62 PRVFFDVTVDDAPLGKIVIELRSDVTPKTCENFRALCTGE------KGFGYKGSIFHRVI 223
P VF D+ +D LG+I I L S + PKT ENFR CTGE K GYK S FHR+I
Sbjct: 5 PVVFMDIAIDGRLLGRIKIRLFSSIVPKTAENFRQFCTGETLGVNQKPIGYKNSTFHRII 64
Query: 224 PNFMLQGGDFTNHNGTGGKSIYGNK-FEDENFTLKHTGPGVLSMANAGADTNGSQFFITT 400
FM+QGGDF + +GTG +I+ ++ F DENFTLKH PG+LSMANAG D+NG QFFITT
Sbjct: 65 QGFMIQGGDFVSGDGTGSATIFNSRTFPDENFTLKHDRPGLLSMANAGKDSNGCQFFITT 124
Query: 401 VKTSWLDGRHVVFGNVVEGMEVVKQIE-TFGSQSGKTSKRIVIKDCGQI 544
V +LDG+HVVFG V+EG ++VK+IE T + + + I +CG++
Sbjct: 125 VPCDFLDGKHVVFGEVIEGYDIVKEIESTPVGANSRPKSNVAIVECGEM 173
>SPAC1B3.03c |wis2|cyp5|cyclophilin family peptidyl-prolyl cis-trans
isomerase Wis2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 356
Score = 183 bits (446), Expect = 1e-47
Identities = 90/160 (56%), Positives = 111/160 (69%), Gaps = 4/160 (2%)
Frame = +2
Query: 71 FFDVTVDDAPLGKIVIELRSDVTPKTCENFRALCTGEKGFG----YKGSIFHRVIPNFML 238
+F +++D I EL +V PKT +NF +LC G + G YKGS FHRVI NFML
Sbjct: 6 YFKISIDGKIQPTIYFELFDNVVPKTVKNFASLCNGFEKDGRCLTYKGSRFHRVIKNFML 65
Query: 239 QGGDFTNHNGTGGKSIYGNKFEDENFTLKHTGPGVLSMANAGADTNGSQFFITTVKTSWL 418
QGGDFT NGTGG+SIYG KFEDENF LKH P +LSMANAG +TNGSQFFITTV T L
Sbjct: 66 QGGDFTRGNGTGGESIYGEKFEDENFELKHDKPFLLSMANAGPNTNGSQFFITTVPTPHL 125
Query: 419 DGRHVVFGNVVEGMEVVKQIETFGSQSGKTSKRIVIKDCG 538
DG+HVVFG V++G V+ IE +++ +VI++CG
Sbjct: 126 DGKHVVFGKVIQGKSTVRTIENLETKNDDPVVPVVIEECG 165
>SPAC57A10.03 |cyp1||cyclophilin family peptidyl-prolyl cis-trans
isomerase Cyp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 155
Score = 150 bits (364), Expect = 1e-37
Identities = 74/127 (58%), Positives = 94/127 (74%), Gaps = 1/127 (0%)
Frame = +2
Query: 101 LGKIVIELRSDVTPKTCENFRALCTGEKGFGYKGSIFHRVIPNFMLQGGDFTNHNGTGGK 280
LGKI+IEL ++ PKTC+NF L ++G+ Y G IFHRVIP+F++QGGD T G GG
Sbjct: 10 LGKILIELYTEHAPKTCQNFYTLA--KEGY-YDGVIFHRVIPDFVIQGGDPTG-TGRGGT 65
Query: 281 SIYGNKFEDE-NFTLKHTGPGVLSMANAGADTNGSQFFITTVKTSWLDGRHVVFGNVVEG 457
SIYG+KF+DE + L HTG G+LSMANAG +TN SQFFIT T WLDG+H +FG VV G
Sbjct: 66 SIYGDKFDDEIHSDLHHTGAGILSMANAGPNTNSSQFFITLAPTPWLDGKHTIFGRVVSG 125
Query: 458 MEVVKQI 478
+ V K++
Sbjct: 126 LSVCKRM 132
>SPCC553.04 |cyp9||WD repeat containing cyclophilin family
peptidyl-prolyl cis-trans isomerase
Cyp9|Schizosaccharomyces pombe|chr 3|||Manual
Length = 610
Score = 122 bits (294), Expect = 4e-29
Identities = 64/127 (50%), Positives = 83/127 (65%), Gaps = 1/127 (0%)
Frame = +2
Query: 104 GKIVIELRSDVTPKTCENFRALCTGEKGFGYKGSIFHRVIPNFMLQGGDFTNHNGTGGKS 283
G I I+L + PK +NF E G+ Y +IFHR+I NFM+QGGD +GTGG+S
Sbjct: 464 GDISIKLYPEEAPKAVQNFTT--HAENGY-YDNTIFHRIIKNFMIQGGDPLG-DGTGGES 519
Query: 284 IYGNKFEDE-NFTLKHTGPGVLSMANAGADTNGSQFFITTVKTSWLDGRHVVFGNVVEGM 460
I+ FEDE + LKH P +SMAN+G +TNGSQFFITT T WLDG+H +F G+
Sbjct: 520 IWKKDFEDEISPNLKHDRPFTVSMANSGPNTNGSQFFITTDLTPWLDGKHTIFARAYAGL 579
Query: 461 EVVKQIE 481
+VV +IE
Sbjct: 580 DVVHRIE 586
>SPAC21E11.05c |cyp8||cyclophilin family peptidyl-prolyl cis-trans
isomerase Cyp8|Schizosaccharomyces pombe|chr 1|||Manual
Length = 516
Score = 109 bits (262), Expect = 3e-25
Identities = 61/138 (44%), Positives = 82/138 (59%), Gaps = 1/138 (0%)
Frame = +2
Query: 104 GKIVIELRSDVTPKTCENFRALCTGEKGFGYKGSIFHRVIPNFMLQGGDFTNHNGTGGKS 283
G+I IEL +D P NF L ++G+ Y+ +IFHR I FM+QGGD + G GG+S
Sbjct: 285 GEINIELHTDYAPHAVYNFVQLA--KQGY-YRNTIFHRNIARFMIQGGD-PSGTGRGGQS 340
Query: 284 IYGNKFEDENFT-LKHTGPGVLSMANAGADTNGSQFFITTVKTSWLDGRHVVFGNVVEGM 460
I+G F+DE LKH G++SMAN G +TNGSQFFI LD +H +FG VV G+
Sbjct: 341 IWGKPFKDEFCNPLKHDDRGIISMANRGKNTNGSQFFILYGPAKHLDNKHTIFGRVVGGL 400
Query: 461 EVVKQIETFGSQSGKTSK 514
V+ +E + S K
Sbjct: 401 NVLDALEKVPTNSNDHPK 418
>SPBC16H5.05c |cyp7|cwf27|cyclophilin family peptidyl-prolyl
cis-trans isomerase Cyp7|Schizosaccharomyces pombe|chr
2|||Manual
Length = 463
Score = 87.8 bits (208), Expect = 1e-18
Identities = 52/117 (44%), Positives = 66/117 (56%), Gaps = 1/117 (0%)
Frame = +2
Query: 104 GKIVIELRSDVTPKTCENFRALCTGEKGFGYKGSIFHRVIPNFMLQGGDFTNHNGTGGKS 283
G I IEL PK C NF LC +G+ Y G+I HRV+P F++QGGD T G GG+S
Sbjct: 22 GDIQIELWCKEVPKACRNFIQLCL--EGY-YDGTIVHRVVPEFLIQGGDPTG-TGMGGES 77
Query: 284 IYGNKFEDENF-TLKHTGPGVLSMANAGADTNGSQFFITTVKTSWLDGRHVVFGNVV 451
IYG F E L+ G++ MA + N SQFFIT T +G+ +FG VV
Sbjct: 78 IYGEPFAVETHPRLRFIRRGLVGMACTENEGNNSQFFITLGPTPEWNGKQTLFGRVV 134
>SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating
transcription Rct1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 432
Score = 61.7 bits (143), Expect = 7e-11
Identities = 50/162 (30%), Positives = 77/162 (47%), Gaps = 16/162 (9%)
Frame = +2
Query: 92 DAPLGKIVIELRSDVTPKTCENFRALCTGEKGFGYKGSIFHRVIPNFMLQGGDFTNHNGT 271
+ +G +VI+L PKTCENF LC K Y F+ + N+ Q GD G
Sbjct: 6 ETTVGDLVIDLFVKEAPKTCENFLKLC---KLKYYNFCPFYNIQHNYTCQTGDPLGPTGD 62
Query: 272 GGKSIY-----GNKFEDENF--TLKHTGPGVLSMANAGADTN-------GSQFFIT-TVK 406
GG+ ++ G +F F +L H G++SM+ A + GSQF IT +
Sbjct: 63 GGRCVWNVLNKGTRFFKAEFNPSLVHNKMGLVSMSTATISSRDDKLLVCGSQFIITLSDN 122
Query: 407 TSWLDGRHVVFGNVVEGMEVVKQI-ETFGSQSGKTSKRIVIK 529
LD R+ ++G V EG + + +I + + G+ + I IK
Sbjct: 123 LEGLDERYPIYGQVAEGFDTLLKINDAICDEEGQPYRDIRIK 164
>SPCC285.13c |||nucleoporin Nup60 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 736
Score = 27.9 bits (59), Expect = 1.1
Identities = 19/51 (37%), Positives = 29/51 (56%)
Frame = +3
Query: 195 TRAPFSIVSSPISCCKEGTSPTITALGESPSTAISLKTRISPLSTLDLASS 347
+RA S++S I KE +P+ITA SP +A S + ISP + + +S
Sbjct: 321 SRAAASLLS--ILDSKEKNTPSITAKAGSPQSAPSKASYISPYARPGITTS 369
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 27.5 bits (58), Expect = 1.5
Identities = 25/86 (29%), Positives = 39/86 (45%)
Frame = +3
Query: 72 SSTSLLTMPHWEKLLLS*EVTSLPRRVKTSVPCALARKASVTRAPFSIVSSPISCCKEGT 251
+STS ++P S + S P TS C + S+ S +S+PI+ T
Sbjct: 198 TSTSSTSIPIPPTSTSSTDTNSSPLPT-TSTSCTTS--TSIPTGGSSSLSTPITPTVPPT 254
Query: 252 SPTITALGESPSTAISLKTRISPLST 329
S + T++ P++ S T SPL T
Sbjct: 255 STSSTSIPIPPTSTSSTDTNSSPLPT 280
Score = 26.6 bits (56), Expect = 2.5
Identities = 25/86 (29%), Positives = 38/86 (44%)
Frame = +3
Query: 72 SSTSLLTMPHWEKLLLS*EVTSLPRRVKTSVPCALARKASVTRAPFSIVSSPISCCKEGT 251
+STS ++P S + S P TS C + T S+ S+PI+ T
Sbjct: 141 TSTSSTSIPIPPTSTSSTDTNSNPLPT-TSTSCTTSTSIPPTGGSSSL-STPITPTVPPT 198
Query: 252 SPTITALGESPSTAISLKTRISPLST 329
S + T++ P++ S T SPL T
Sbjct: 199 STSSTSIPIPPTSTSSTDTNSSPLPT 224
Score = 25.0 bits (52), Expect = 7.7
Identities = 17/58 (29%), Positives = 27/58 (46%)
Frame = +3
Query: 156 TSVPCALARKASVTRAPFSIVSSPISCCKEGTSPTITALGESPSTAISLKTRISPLST 329
TS C + T S+ S+PI+ TS + T++ P++ S T +PL T
Sbjct: 111 TSTSCTTSTSIPPTGGSSSL-STPITPTVPPTSTSSTSIPIPPTSTSSTDTNSNPLPT 167
>SPBP8B7.07c |set6||histone lysine methyltransferase Set6
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 483
Score = 27.1 bits (57), Expect = 1.9
Identities = 11/32 (34%), Positives = 16/32 (50%)
Frame = +2
Query: 80 VTVDDAPLGKIVIELRSDVTPKTCENFRALCT 175
V D+ P+GKI+I R D+ N C+
Sbjct: 19 VATDNIPIGKIIIRKRVDILSLDSANLTRTCS 50
>SPBC32C12.03c |ppk25||serine/threonine protein kinase Ppk25
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 423
Score = 27.1 bits (57), Expect = 1.9
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = -2
Query: 504 FPDWLPKVSICLTTSMPSTTFPKTTCLPS 418
FP WL K S CL +P T+ P T + S
Sbjct: 302 FP-WLKKNSFCLYLPIPLTSIPSTPSIRS 329
>SPAC110.03 |cdc42||Rho family GTPase Cdc42|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 192
Score = 26.6 bits (56), Expect = 2.5
Identities = 7/9 (77%), Positives = 8/9 (88%)
Frame = +1
Query: 376 WFPVLHHHC 402
WFP +HHHC
Sbjct: 97 WFPEVHHHC 105
>SPBC29A3.01 |||heavy metal ATPase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 904
Score = 26.6 bits (56), Expect = 2.5
Identities = 13/53 (24%), Positives = 24/53 (45%)
Frame = -1
Query: 538 TTVFDNDSLRGLPRLAAKGLNLLDNFHAFNNIPKDNMSAIQPGGLDSGDEELG 380
T VFD + +L+ ++++DN +IPK+ A S + +G
Sbjct: 525 TVVFDKTGTLTVGKLSVTDISIVDNLEELLDIPKNIFWAFVKASESSSEHPIG 577
>SPAC17D4.04 ||SPAC458.01|tRNA |Schizosaccharomyces pombe|chr
1|||Manual
Length = 654
Score = 26.2 bits (55), Expect = 3.4
Identities = 15/50 (30%), Positives = 25/50 (50%)
Frame = -2
Query: 471 LTTSMPSTTFPKTTCLPSSQEVLTVVMKNWEPLVSAPALAMERTPGPVCL 322
LT +P TTF T +P + +V ++++ PL+ + P PV L
Sbjct: 37 LTEQLP-TTFRITASIPHATQVRDYFIEHYYPLIENARTEDAKIPLPVSL 85
>SPAP7G5.06 |||amino acid permease, unknown 4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 583
Score = 25.8 bits (54), Expect = 4.4
Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Frame = +2
Query: 248 DFTNHNGTGGKSIYGNKFEDEN-FTLKHTGPGVLSMANAGADTNGSQFFI 394
D + T KS+YG +D+N F + T V+ ADT Q F+
Sbjct: 11 DLEKYPSTATKSVYGQSKDDKNVFDIHPTESEVIPGEVEYADTPSHQNFL 60
>SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 530
Score = 25.8 bits (54), Expect = 4.4
Identities = 18/65 (27%), Positives = 31/65 (47%)
Frame = -2
Query: 489 PKVSICLTTSMPSTTFPKTTCLPSSQEVLTVVMKNWEPLVSAPALAMERTPGPVCLRVKF 310
P S + +S +++ T+ P+S EV T P+ S+ A + E + G V
Sbjct: 162 PASSTEVASSYSASSTEVTSSYPASSEVATSTSSYVAPVSSSVASSSEISAGSATSYVPT 221
Query: 309 SSSNL 295
SSS++
Sbjct: 222 SSSSI 226
>SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting protein
3 homolog Bud6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1385
Score = 25.8 bits (54), Expect = 4.4
Identities = 15/64 (23%), Positives = 30/64 (46%)
Frame = -1
Query: 256 GEVPSLQHEIGDDTMENGALVTEAFLASAQGTEVFTRLGSDVTSQLNNNFSQWGIVNSDV 77
GEV ++QH +T+++ T S+ TE+ RL + + ++ N +
Sbjct: 878 GEVSAIQHSSAQNTLDDHVNTTTHESPSSAFTEILERLKA-IEQNISTNHTNDSAALKSS 936
Query: 76 EEYS 65
E++S
Sbjct: 937 EDHS 940
>SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 534
Score = 25.4 bits (53), Expect = 5.9
Identities = 22/70 (31%), Positives = 30/70 (42%), Gaps = 6/70 (8%)
Frame = -1
Query: 460 HAFNNIPKDNMSAIQPGGLDSGDEELGTISISTGISHGEDARSSVLKG------EILVFK 299
H N P + P +S EL + IS+G+DA S VLK E++V +
Sbjct: 228 HELNESPSTPTAPDFPH-YNSSPSELSPTQRRSSISNGKDAPSPVLKDLTSYTQEVIVCR 286
Query: 298 LIAVDGLSPS 269
LSPS
Sbjct: 287 KFLHHSLSPS 296
>SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|chr
3|||Manual
Length = 867
Score = 25.0 bits (52), Expect = 7.7
Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 9/54 (16%)
Frame = -2
Query: 201 PL*PKPFSPVH---RAR-----KFSHVL-GVTSLLSSITIFPSGASSTVTSKNT 67
P PKP +PV+ R + S+VL +TS SS+T PS + +T+ S T
Sbjct: 312 PSPPKPNNPVYLPPRGNPTVNDRVSNVLPSITSFDSSVTTVPSNSPATLNSYTT 365
>SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1616
Score = 25.0 bits (52), Expect = 7.7
Identities = 10/22 (45%), Positives = 16/22 (72%), Gaps = 1/22 (4%)
Frame = +2
Query: 107 KIVIELRSDVTPKTC-ENFRAL 169
++++ L SD+ PK C NF+AL
Sbjct: 1135 QLMLRLHSDIYPKICISNFKAL 1156
>SPCC24B10.17 |emp24||COPII-coated vesicle component Emp24
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 199
Score = 25.0 bits (52), Expect = 7.7
Identities = 14/59 (23%), Positives = 25/59 (42%)
Frame = +2
Query: 200 GSIFHRVIPNFMLQGGDFTNHNGTGGKSIYGNKFEDENFTLKHTGPGVLSMANAGADTN 376
G I H+ +PN M Q + G Y + + E+ + GV+ +++ D N
Sbjct: 67 GQIMHQEVPNSMAQYSFTVKNPGKYMYCFYNDALDGESKEVLFNVHGVIYISDEDLDAN 125
>SPAC30D11.01c ||SPAC56F8.01|alpha-glucosidase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 993
Score = 25.0 bits (52), Expect = 7.7
Identities = 18/68 (26%), Positives = 30/68 (44%), Gaps = 2/68 (2%)
Frame = -1
Query: 544 NLTTVFDNDSLRGLPRLAAKGLNLLDNFHA--FNNIPKDNMSAIQPGGLDSGDEELGTIS 371
N+ ++ L G + G NL F A +++ P+ NM P ++ +GT +
Sbjct: 210 NMVEDYNVYGLSGSQQSFRLGNNLTKTFWATGYSDSPEANMYGSHPFYMEQRYIPIGTTN 269
Query: 370 ISTGISHG 347
T SHG
Sbjct: 270 TYTSASHG 277
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,586,481
Number of Sequences: 5004
Number of extensions: 58448
Number of successful extensions: 232
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 209
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 218
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 240047038
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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