Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10d23r
         (775 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC146.12 |coq6||monooxygenase Coq6|Schizosaccharomyces pombe|c...    35   0.015
SPBC16C6.12c |||Las1-like protein|Schizosaccharomyces pombe|chr ...    29   0.56 
SPAC22E12.06c |gmh3||alpha-1,2-galactosyltransferase Gmh3|Schizo...    27   3.9  
SPACUNK4.12c |mug138||metallopeptidase|Schizosaccharomyces pombe...    27   3.9  
SPAPB8E5.07c |||ribosome biogenesis protein Rrp12|Schizosaccharo...    26   6.9  
SPAC18G6.10 |||chromosome segregation protein |Schizosaccharomyc...    26   6.9  
SPAC3A11.14c |pkl1|klp1, SPAC3H5.03c|kinesin-like protein Pkl1|S...    26   6.9  
SPAC1093.04c |||tRNA nucleotidyltransferase |Schizosaccharomyces...    25   9.1  

>SPBC146.12 |coq6||monooxygenase Coq6|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 466

 Score = 34.7 bits (76), Expect = 0.015
 Identities = 24/74 (32%), Positives = 34/74 (45%), Gaps = 5/74 (6%)
 Frame = -1

Query: 661 LIADYFAGS--ASPLIAIKCRPYNVEDKALIIGDAAHAVVPFYGQGMNAGFEDCTILNQL 488
           +I +  +GS  A PL       Y V++   + GDAAH   P  GQG+N G +D   L   
Sbjct: 330 VITEIVSGSRAAFPLRLAHVDEY-VKEGIALCGDAAHNTHPLAGQGLNTGIQDVESLISA 388

Query: 487 FQ---KHHDDLAKI 455
                KH  D+  +
Sbjct: 389 LSFAIKHGQDIGSV 402


>SPBC16C6.12c |||Las1-like protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 470

 Score = 29.5 bits (63), Expect = 0.56
 Identities = 21/74 (28%), Positives = 36/74 (48%), Gaps = 4/74 (5%)
 Frame = -1

Query: 406 DLAMYNYIEMRDLVTR---PSY-LLRKAIDDVIFWLMPKVWIPLYNSVTFSTIPYTQCIK 239
           DL  Y ++E+R  +T    PS  +LR+A    + WL    W P   + +  T  YT+  +
Sbjct: 108 DLPTY-FVELRHAITHEELPSLPVLRQAAQRALSWLYDHYWNPAATAESEDTYDYTETNE 166

Query: 238 NRQWQDKVLNRSLL 197
             +++ K   + LL
Sbjct: 167 LHKFEIKRKVKDLL 180


>SPAC22E12.06c |gmh3||alpha-1,2-galactosyltransferase
           Gmh3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 332

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
 Frame = -1

Query: 745 KSLDNEDKLLKFFEKYFPDSIPLIG--KQKLIADYFAG 638
           K  D+E  LL +F +Y P+   +IG   Q LI  Y  G
Sbjct: 259 KVADHEQALLGYFVRYHPEIAAIIGILPQTLINSYPVG 296


>SPACUNK4.12c |mug138||metallopeptidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 969

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 16/44 (36%), Positives = 27/44 (61%), Gaps = 5/44 (11%)
 Frame = -1

Query: 739 LDNEDKLLKFFEKYFPDSI---PLIGKQKL--IADYFAGSASPL 623
           LD   +LLKF++KY+  +I    +IG++ L  + D+ A   SP+
Sbjct: 195 LDVRQELLKFYDKYYSANIMKLVIIGREPLDVLQDWAAELFSPI 238


>SPAPB8E5.07c |||ribosome biogenesis protein
           Rrp12|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1163

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 16/50 (32%), Positives = 26/50 (52%)
 Frame = -1

Query: 385 IEMRDLVTRPSYLLRKAIDDVIFWLMPKVWIPLYNSVTFSTIPYTQCIKN 236
           IEM DL + PS LL+  +D +   L    ++PL    +F T+ +   + N
Sbjct: 496 IEMNDLDSIPSKLLQTLVDQIWSLLPGYCYLPLDLQSSF-TLEFASILVN 544


>SPAC18G6.10 |||chromosome segregation protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 688

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +1

Query: 277 QSCREESKLWASTKK*RHQ*LFAGDRMV 360
           Q  R+ESKLW+  KK  H   +A  R++
Sbjct: 275 QQTRKESKLWSFIKKVFHDIKYANYRLL 302


>SPAC3A11.14c |pkl1|klp1, SPAC3H5.03c|kinesin-like protein
           Pkl1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 832

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = -1

Query: 262 IPYTQCIKNRQWQDKVLNRSLLFLGTVTSAVG 167
           + Y+Q + +R  + + +N+SL  LG V  A+G
Sbjct: 728 LSYSQAVGDRLRETQAINKSLSCLGDVIHALG 759


>SPAC1093.04c |||tRNA nucleotidyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 500

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 16/48 (33%), Positives = 23/48 (47%)
 Frame = -1

Query: 457 ILKEFSDTRWEDTFAISDLAMYNYIEMRDLVTRPSYLLRKAIDDVIFW 314
           ++K   +   E+ + I  +   N I  R L  RP   LRK +DD I W
Sbjct: 427 LVKHIEEYGMEEAYNIQPIINGNEIT-RILGIRPGPHLRKMLDDSIEW 473


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,075,606
Number of Sequences: 5004
Number of extensions: 63929
Number of successful extensions: 174
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 174
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 373338084
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)