Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10d23r
(775 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0609 - 35042276-35042388,35042476-35042527,35042624-350427... 38 0.012
02_04_0253 + 21310082-21310094,21310606-21311135 37 0.015
02_04_0251 + 21301658-21302107 37 0.015
02_04_0249 + 21283004-21283016,21283526-21284055 37 0.015
02_04_0247 + 21273978-21273990,21274500-21275029 37 0.015
02_04_0245 + 21262645-21262754,21262851-21262997,21263100-212631... 37 0.015
01_06_1696 + 39256171-39256393,39256513-39256595,39256692-392568... 32 0.44
02_03_0182 + 16101861-16101955,16102226-16102372,16102465-161025... 32 0.58
03_02_0259 - 6920472-6920579,6920744-6921022,6921115-6921390,692... 31 0.77
01_01_0044 - 326337-326500,326618-327398 31 0.77
01_06_0529 - 30026101-30026277,30026363-30026438,30026509-300265... 30 1.8
08_02_1482 - 27428208-27428514,27428605-27428906,27431176-274322... 29 3.1
11_06_0727 - 26709399-26710863,26713529-26713898,26714115-26714421 29 5.4
10_08_0608 + 19184722-19185224,19185331-19185410,19186048-191862... 29 5.4
03_01_0377 + 2940333-2940418,2940512-2940658,2940741-2940809,294... 29 5.4
08_02_1584 - 28039228-28039342,28039987-28040156,28043009-28043137 28 7.2
08_02_0436 + 17156894-17156968,17157366-17157390,17158126-171582... 28 9.5
>03_06_0609 -
35042276-35042388,35042476-35042527,35042624-35042725,
35043546-35043745,35045258-35045336,35045541-35045595,
35045947-35046122,35046386-35046988,35047077-35047265,
35048150-35048201,35048289-35048356,35048873-35048911,
35048912-35048970,35049639-35049782,35050136-35050238,
35050368-35050467,35050596-35050612
Length = 716
Score = 37.5 bits (83), Expect = 0.012
Identities = 15/33 (45%), Positives = 20/33 (60%)
Frame = -1
Query: 595 VEDKALIIGDAAHAVVPFYGQGMNAGFEDCTIL 497
+ + ++GDAAH V P GQG+N GF D L
Sbjct: 410 ISKRLALVGDAAHTVHPLAGQGVNLGFGDAAAL 442
>02_04_0253 + 21310082-21310094,21310606-21311135
Length = 180
Score = 37.1 bits (82), Expect = 0.015
Identities = 15/27 (55%), Positives = 19/27 (70%)
Frame = -1
Query: 577 IIGDAAHAVVPFYGQGMNAGFEDCTIL 497
+ GDA HA+ PF GQG +AG ED +L
Sbjct: 67 VAGDAMHAMGPFIGQGGSAGLEDAVVL 93
>02_04_0251 + 21301658-21302107
Length = 149
Score = 37.1 bits (82), Expect = 0.015
Identities = 15/27 (55%), Positives = 19/27 (70%)
Frame = -1
Query: 577 IIGDAAHAVVPFYGQGMNAGFEDCTIL 497
+ GDA HA+ PF GQG +AG ED +L
Sbjct: 36 VAGDAMHAMGPFIGQGGSAGLEDAVVL 62
>02_04_0249 + 21283004-21283016,21283526-21284055
Length = 180
Score = 37.1 bits (82), Expect = 0.015
Identities = 15/27 (55%), Positives = 19/27 (70%)
Frame = -1
Query: 577 IIGDAAHAVVPFYGQGMNAGFEDCTIL 497
+ GDA HA+ PF GQG +AG ED +L
Sbjct: 67 VAGDAMHAMGPFIGQGGSAGLEDAVVL 93
>02_04_0247 + 21273978-21273990,21274500-21275029
Length = 180
Score = 37.1 bits (82), Expect = 0.015
Identities = 15/27 (55%), Positives = 19/27 (70%)
Frame = -1
Query: 577 IIGDAAHAVVPFYGQGMNAGFEDCTIL 497
+ GDA HA+ PF GQG +AG ED +L
Sbjct: 67 VAGDAMHAMGPFIGQGGSAGLEDAVVL 93
>02_04_0245 +
21262645-21262754,21262851-21262997,21263100-21263156,
21263256-21263442,21264700-21264925,21265474-21266003
Length = 418
Score = 37.1 bits (82), Expect = 0.015
Identities = 15/27 (55%), Positives = 19/27 (70%)
Frame = -1
Query: 577 IIGDAAHAVVPFYGQGMNAGFEDCTIL 497
+ GDA HA+ PF GQG +AG ED +L
Sbjct: 305 VAGDAMHAMGPFIGQGGSAGLEDAVVL 331
>01_06_1696 +
39256171-39256393,39256513-39256595,39256692-39256831,
39256882-39257398,39257518-39257565,39257832-39258006,
39258122-39258234,39258329-39258425,39258579-39258798,
39258985-39259144,39259233-39259646
Length = 729
Score = 32.3 bits (70), Expect = 0.44
Identities = 12/28 (42%), Positives = 19/28 (67%)
Frame = -1
Query: 592 EDKALIIGDAAHAVVPFYGQGMNAGFED 509
+++ +++GDAAH P G GMN G +D
Sbjct: 376 DNRIILVGDAAHRFPPAGGFGMNTGVQD 403
>02_03_0182 +
16101861-16101955,16102226-16102372,16102465-16102515,
16102617-16102782,16103055-16103283,16104067-16104638
Length = 419
Score = 31.9 bits (69), Expect = 0.58
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = -1
Query: 577 IIGDAAHAVVPFYGQGMNAGFEDCTIL 497
+ GDA H + PF GQG ++ ED +L
Sbjct: 296 VAGDAMHVMGPFIGQGGSSALEDAVVL 322
>03_02_0259 -
6920472-6920579,6920744-6921022,6921115-6921390,
6921473-6921691,6921795-6921963,6922248-6922422,
6922490-6922601,6923343-6923573
Length = 522
Score = 31.5 bits (68), Expect = 0.77
Identities = 23/67 (34%), Positives = 30/67 (44%), Gaps = 5/67 (7%)
Frame = -1
Query: 583 ALIIGDAAHAVVPFYGQGMNAGFEDCTILNQLFQ---KHHD--DLAKILKEFSDTRWEDT 419
AL++GDA + P G GM F D +L L + HD L K L+ F R
Sbjct: 338 ALLMGDAFNMRHPLTGGGMTVAFSDIVVLRNLLKPLGNLHDAPSLCKYLESFYTLRKPVA 397
Query: 418 FAISDLA 398
I+ LA
Sbjct: 398 STINTLA 404
>01_01_0044 - 326337-326500,326618-327398
Length = 314
Score = 31.5 bits (68), Expect = 0.77
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = -1
Query: 661 LIADYFAGSASPLIAIKCRPYNVEDKALIIGDAAHAVV 548
++++YFAG A P I P D +I+GD A VV
Sbjct: 157 VVSNYFAGYALPTIGQNLPPARPVDSVVILGDGATKVV 194
>01_06_0529 -
30026101-30026277,30026363-30026438,30026509-30026570,
30026882-30027031,30027213-30027338,30028096-30028305,
30028870-30028938,30029024-30029080,30029131-30029277,
30029358-30029542,30029623-30029698,30029796-30029918,
30030395-30030410,30031743-30032745,30033521-30033789,
30034297-30034415
Length = 954
Score = 30.3 bits (65), Expect = 1.8
Identities = 15/51 (29%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Frame = -1
Query: 595 VEDKALIIGDAAHAVVPFYGQG-MNAGFEDCTILNQLFQKHHDDLAKILKE 446
+++K IG+ V+P++G + + ++D +LNQ + +D+ KIL E
Sbjct: 101 IDEKIAAIGNEQQEVLPYWGGHILISAYQDILLLNQARLQAIEDVDKILTE 151
>08_02_1482 -
27428208-27428514,27428605-27428906,27431176-27432228,
27432305-27432421,27432510-27432843,27433064-27433188,
27433408-27433475,27433555-27433636,27433753-27433866,
27433942-27434042,27434145-27434234,27434615-27434819
Length = 965
Score = 29.5 bits (63), Expect = 3.1
Identities = 14/55 (25%), Positives = 28/55 (50%)
Frame = -1
Query: 481 KHHDDLAKILKEFSDTRWEDTFAISDLAMYNYIEMRDLVTRPSYLLRKAIDDVIF 317
K D+ ++ + F+ E+ F++SD + Y + + V SY+ DD++F
Sbjct: 410 KRWDEHSRSSESFARNASEEAFSVSDTSGVPYQDQDNAVFNGSYVFSDDRDDIVF 464
>11_06_0727 - 26709399-26710863,26713529-26713898,26714115-26714421
Length = 713
Score = 28.7 bits (61), Expect = 5.4
Identities = 11/29 (37%), Positives = 19/29 (65%)
Frame = -3
Query: 110 LVLYTFIALAFTLKIISISVCFMLLHSLR 24
+V Y F A++F ++ +S+ F+LLH R
Sbjct: 59 IVFYWFNAISFAASLVVVSLLFLLLHKGR 87
>10_08_0608 +
19184722-19185224,19185331-19185410,19186048-19186235,
19187021-19187927,19188015-19188142,19189270-19189356,
19189422-19189472,19189582-19189668,19189746-19189873,
19190469-19190608,19190721-19190882,19190964-19192733,
19192807-19192922,19193077-19193227,19193243-19193371,
19193598-19194139
Length = 1722
Score = 28.7 bits (61), Expect = 5.4
Identities = 22/69 (31%), Positives = 30/69 (43%), Gaps = 3/69 (4%)
Frame = -1
Query: 550 VPFYGQGMNAGFEDCTILNQLFQKHHDDLAKILKEFSD-TRWEDTFAI--SDLAMYNYIE 380
V F+G N GF D L + DD AK +F D WE F + DL + +
Sbjct: 227 VKFFGVRGNKGFCDTCYSTILLIESKDDRAKAKVDFDDKNNWEYLFKLYWLDLKGKHSLT 286
Query: 379 MRDLVTRPS 353
+ +LV S
Sbjct: 287 LEELVNAKS 295
>03_01_0377 +
2940333-2940418,2940512-2940658,2940741-2940809,
2940958-2941123,2941208-2941436,2941528-2942054
Length = 407
Score = 28.7 bits (61), Expect = 5.4
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = -1
Query: 583 ALIIGDAAHAVVPFYGQGMNAGFEDCTIL 497
A + GDA H + P GQG A ED +L
Sbjct: 296 ACVAGDALHPMTPDLGQGGCAALEDGVVL 324
>08_02_1584 - 28039228-28039342,28039987-28040156,28043009-28043137
Length = 137
Score = 28.3 bits (60), Expect = 7.2
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = -1
Query: 487 FQKHHDDLAKILKEFSDTRWEDTFAISDLAMYNYIE 380
F + L I KE+ +W+D AISDLA + + E
Sbjct: 81 FSIARERLVDIDKEYGMKKWKDESAISDLAGHGFEE 116
>08_02_0436 +
17156894-17156968,17157366-17157390,17158126-17158202,
17158685-17158828,17159427-17159596,17160246-17160360
Length = 201
Score = 27.9 bits (59), Expect = 9.5
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = -1
Query: 466 LAKILKEFSDTRWEDTFAISDLAMYNYIE 380
L + KE+ RW D AISDLA + + E
Sbjct: 152 LVDLDKEYGMKRWRDDSAISDLAGHGFEE 180
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,402,811
Number of Sequences: 37544
Number of extensions: 367915
Number of successful extensions: 847
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 823
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 847
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2068401984
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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