Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10d23r
         (775 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_25257| Best HMM Match : Pkinase (HMM E-Value=4e-10)                115   4e-26
SB_8863| Best HMM Match : DAO (HMM E-Value=0.04)                       41   0.001
SB_25248| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.4  
SB_44881| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.8  
SB_16195| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.8  
SB_35600| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.2  
SB_31775| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.2  
SB_32046| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.5  
SB_52389| Best HMM Match : NACHT (HMM E-Value=2.1e-09)                 28   9.6  
SB_3196| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   9.6  

>SB_25257| Best HMM Match : Pkinase (HMM E-Value=4e-10)
          Length = 892

 Score =  115 bits (277), Expect = 4e-26
 Identities = 50/82 (60%), Positives = 63/82 (76%)
 Frame = -1

Query: 613 KCRPYNVEDKALIIGDAAHAVVPFYGQGMNAGFEDCTILNQLFQKHHDDLAKILKEFSDT 434
           KC+PY+V DK +I+GDAAHA+VPFYGQGMN GFEDC +LN++  KH+D+L   L+E+S  
Sbjct: 99  KCKPYHVADKVVILGDAAHAMVPFYGQGMNCGFEDCLVLNEILDKHNDNLGAALEEYSML 158

Query: 433 RWEDTFAISDLAMYNYIEMRDL 368
           R  D  A+ DLAMYNYIE   L
Sbjct: 159 RNPDAEAMCDLAMYNYIECGSL 180


>SB_8863| Best HMM Match : DAO (HMM E-Value=0.04)
          Length = 485

 Score = 40.7 bits (91), Expect = 0.001
 Identities = 18/35 (51%), Positives = 21/35 (60%)
 Frame = -1

Query: 772 TLFMPXTHFKSLDNEDKLLKFFEKYFPDSIPLIGK 668
           TLF P   F  +   D +L FF K FPD IPLIG+
Sbjct: 451 TLFAPFDTFDEIKTNDDVLNFFNKEFPDFIPLIGE 485


>SB_25248| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 521

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 21/66 (31%), Positives = 35/66 (53%), Gaps = 3/66 (4%)
 Frame = +2

Query: 287 ERNPNFGHQPKNDVINSFSQEIGWSCYKI-SHLNIIV--HSQITNCKSILPSGVREFFQY 457
           +  PNF ++P   +IN    EIG    KI   +N ++  +   TN K++ PS + EF+  
Sbjct: 15  DHKPNFANKPTCRLINPTKPEIGKISKKILDRINSVMQRNETSTNGKALKPS-LTEFYPS 73

Query: 458 FSQIIM 475
            SQ ++
Sbjct: 74  ISQDLL 79


>SB_44881| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 133

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 12/32 (37%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
 Frame = +2

Query: 515 EASVH-TLAVKWNHSVSCVTNDQSFVFYIVRS 607
           EA +H TL  KW +++S +  D  +VFY  ++
Sbjct: 56  EALIHDTLCTKWVYNISVMHKDNKYVFYATKT 87


>SB_16195| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 111

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 12/32 (37%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
 Frame = +2

Query: 515 EASVH-TLAVKWNHSVSCVTNDQSFVFYIVRS 607
           EA +H TL  KW +++S +  D  +VFY  ++
Sbjct: 45  EALIHDTLCTKWVYNISVMHKDNKYVFYATKT 76


>SB_35600| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 305

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 11/32 (34%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
 Frame = +2

Query: 515 EASVH-TLAVKWNHSVSCVTNDQSFVFYIVRS 607
           EA +H TL  +W +++S +  D  +VFY  ++
Sbjct: 23  EALIHDTLCTEWVYNISVIHKDNKYVFYSTKT 54


>SB_31775| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 551

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = -1

Query: 568 DAAHAVVPFYGQGMNAGFEDCTILN 494
           D A A V FYG G+N G   C +L+
Sbjct: 298 DKASAEVTFYGGGLNTGTPTCKVLD 322


>SB_32046| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1570

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 11/32 (34%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
 Frame = +2

Query: 515 EASVH-TLAVKWNHSVSCVTNDQSFVFYIVRS 607
           EA +H TL  +W +++S +  D  +VFY  ++
Sbjct: 104 EALIHDTLCTEWVYNISVMHKDNKYVFYATKT 135


>SB_52389| Best HMM Match : NACHT (HMM E-Value=2.1e-09)
          Length = 818

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +2

Query: 527 HTLAVKWNHSVSCVTNDQSFVFY 595
           +TL  KW +++S +  D  +VFY
Sbjct: 566 YTLCTKWMYNISVMHKDNKYVFY 588


>SB_3196| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 339

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = -1

Query: 262 IPYTQCIKNRQWQDKVLNRS 203
           +P T+ +KN++W+D V  RS
Sbjct: 157 VPATELMKNKEWRDAVATRS 176


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,176,760
Number of Sequences: 59808
Number of extensions: 445758
Number of successful extensions: 972
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 905
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 972
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2107953584
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)