Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10d23r
         (775 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z75955-3|CAB00114.1|  461|Caenorhabditis elegans Hypothetical pr...   207   8e-54
Z75955-13|CAB00113.2|  424|Caenorhabditis elegans Hypothetical p...    83   2e-16
AF003384-6|AAB54238.2|  451|Caenorhabditis elegans Coenzyme q (u...    38   0.011
AF303255-1|AAG50213.1|  573|Caenorhabditis elegans putative guan...    28   6.4  
AC024817-8|AAU05551.1|  535|Caenorhabditis elegans Hypothetical ...    28   6.4  
AC024817-7|AAK68527.1|  573|Caenorhabditis elegans Hypothetical ...    28   6.4  
Z69662-7|CAA93497.2| 1132|Caenorhabditis elegans Hypothetical pr...    28   8.5  

>Z75955-3|CAB00114.1|  461|Caenorhabditis elegans Hypothetical
           protein R07B7.5 protein.
          Length = 461

 Score =  207 bits (505), Expect = 8e-54
 Identities = 96/217 (44%), Positives = 144/217 (66%), Gaps = 3/217 (1%)
 Frame = -1

Query: 775 VTLFMPXTHF-KSLDNEDKLLKFFEKYFPDSIPLIGKQKLIADYFAGSASPLIAIKCRPY 599
           VT+F P + F K +   + +L FFE+ FPD+  L+GK+ +   +      PL++IKC P+
Sbjct: 245 VTIFAPFSEFEKHMSTSEDVLSFFEENFPDAFLLLGKEHIADTFNRVKPQPLVSIKCSPH 304

Query: 598 NVEDKALIIGDAAHAVVPFYGQGMNAGFEDCTILNQLFQKHHDDLAKILKEFSDTRWEDT 419
           +  D  +++GDAAHA+VPFYGQGMN GFEDC + ++  +++ +D+AK +K +SD R  D 
Sbjct: 305 SFFDNLVLMGDAAHAMVPFYGQGMNCGFEDCLVFSETLEEYGNDIAKAVKVYSDGRVNDA 364

Query: 418 FAISDLAMYNYIEMRDLVTRPSYLLRKAIDDVIFWLMPKVWIPLYNSVTFSTIPYTQCIK 239
            +I+DLAMYNY E++DLV + SY LRK  D ++  + PK WIPLY+ VTFS IPY++ I+
Sbjct: 365 HSINDLAMYNYEELKDLVNKSSYKLRKKFDTIMNSIFPKSWIPLYSMVTFSRIPYSEVIE 424

Query: 238 NRQWQDKVLNRSLLFLGTVT--SAVGAFYVYKKFVGL 134
            R+ QDK+L+R +    T+    A    YV +  +GL
Sbjct: 425 RRKRQDKILSRIMTTTSTLALIGAAAGIYVNRGKLGL 461


>Z75955-13|CAB00113.2|  424|Caenorhabditis elegans Hypothetical
           protein R07B7.4 protein.
          Length = 424

 Score = 83.0 bits (196), Expect = 2e-16
 Identities = 41/127 (32%), Positives = 73/127 (57%), Gaps = 2/127 (1%)
 Frame = -1

Query: 775 VTLFMPXTHFKS-LDNEDKLLKFFEKYFPDSIPLIGKQKLIADYFAGSASPLIAIKCRPY 599
           V++F   + F+S L    + + FF+  F +   ++G+  +           +I+++C  +
Sbjct: 188 VSMFATFSEFESNLVGPVESVLFFKNNFYEIFKILGEDHIRNTIARNKPQAIISVQCSQH 247

Query: 598 NVEDKALIIGDAAHAVVPFYGQGMNAGFEDCTILNQLF-QKHHDDLAKILKEFSDTRWED 422
              DK +++GDAAHA+VPF GQG+N GFEDC +L ++  Q   D+L  ++KE+S  R  +
Sbjct: 248 VFFDKLVLMGDAAHAMVPFNGQGVNCGFEDCLVLQEIMDQYEEDELEDVIKEYSKVRTNE 307

Query: 421 TFAISDL 401
           T  I+ +
Sbjct: 308 TNIINQM 314


>AF003384-6|AAB54238.2|  451|Caenorhabditis elegans Coenzyme q
           (ubiquinone) biosynthesisprotein 6 protein.
          Length = 451

 Score = 37.5 bits (83), Expect = 0.011
 Identities = 15/36 (41%), Positives = 24/36 (66%)
 Frame = -1

Query: 595 VEDKALIIGDAAHAVVPFYGQGMNAGFEDCTILNQL 488
           +  +  +IGDAAH + P  GQG+N G+ D  IL+++
Sbjct: 338 ITTRCALIGDAAHRMHPLAGQGVNLGWSDVQILDKV 373


>AF303255-1|AAG50213.1|  573|Caenorhabditis elegans putative
           guanylate-binding protein protein.
          Length = 573

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 18/59 (30%), Positives = 28/59 (47%)
 Frame = +2

Query: 284 VERNPNFGHQPKNDVINSFSQEIGWSCYKISHLNIIVHSQITNCKSILPSGVREFFQYF 460
           V  NPNF  +   D+ N F Q++G    ++   + +VH +I   K       RE  +YF
Sbjct: 287 VATNPNFDGKLV-DIENEFQQQLGVMIPRLLDSHALVHKEINGQKMT----CRELLEYF 340


>AC024817-8|AAU05551.1|  535|Caenorhabditis elegans Hypothetical
           protein Y54G2A.2b protein.
          Length = 535

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 18/59 (30%), Positives = 28/59 (47%)
 Frame = +2

Query: 284 VERNPNFGHQPKNDVINSFSQEIGWSCYKISHLNIIVHSQITNCKSILPSGVREFFQYF 460
           V  NPNF  +   D+ N F Q++G    ++   + +VH +I   K       RE  +YF
Sbjct: 287 VATNPNFDGKLV-DIENEFQQQLGVMIPRLLDSHALVHKEINGQKMT----CRELLEYF 340


>AC024817-7|AAK68527.1|  573|Caenorhabditis elegans Hypothetical
           protein Y54G2A.2a protein.
          Length = 573

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 18/59 (30%), Positives = 28/59 (47%)
 Frame = +2

Query: 284 VERNPNFGHQPKNDVINSFSQEIGWSCYKISHLNIIVHSQITNCKSILPSGVREFFQYF 460
           V  NPNF  +   D+ N F Q++G    ++   + +VH +I   K       RE  +YF
Sbjct: 287 VATNPNFDGKLV-DIENEFQQQLGVMIPRLLDSHALVHKEINGQKMT----CRELLEYF 340


>Z69662-7|CAA93497.2| 1132|Caenorhabditis elegans Hypothetical
           protein F56D5.9 protein.
          Length = 1132

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 15/59 (25%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
 Frame = -1

Query: 496 NQLFQKHHDDLAKILKEFSDTRWEDTFAISDLAMY-NYIEMRDLVTRPSYLLRKAIDDV 323
           +++   + DDL+KILK  +  R      +SD   Y N     + + +P  + ++AI+++
Sbjct: 519 SKMVGSYMDDLSKILKALNSARDNTLKKLSDEIKYLNRFNQSEEINKPLLIGKEAIEEL 577


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,807,931
Number of Sequences: 27780
Number of extensions: 351454
Number of successful extensions: 834
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 816
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 833
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1861650246
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)