Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10d23f
         (576 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC191.02c ||SPCC417.14c|acetyl-CoA ligase |Schizosaccharomyces...    29   0.64 
SPAC29A4.11 |rga3||GTPase activating protein Rga3|Schizosaccharo...    27   2.0  
SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces p...    26   3.4  
SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase Vas1|Schizos...    25   6.0  

>SPCC191.02c ||SPCC417.14c|acetyl-CoA ligase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 662

 Score = 28.7 bits (61), Expect = 0.64
 Identities = 9/30 (30%), Positives = 19/30 (63%)
 Frame = -2

Query: 458 RIIRNNISGTIDSVDVASFHGDPMIIDHVV 369
           RI+R  ++G +D +   S   DP +++H++
Sbjct: 622 RILRKILAGEVDQIGDLSTLADPKVVEHII 651


>SPAC29A4.11 |rga3||GTPase activating protein
           Rga3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 969

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 15/49 (30%), Positives = 26/49 (53%)
 Frame = +3

Query: 288 TPQARGRSINLALSIRGRTALREVGLEDHMINNHGIPMKGRNIHRIDGS 434
           +P   GRS+   L I G    + + +    ++ HG+ ++G  I+RI GS
Sbjct: 774 SPTMFGRSLENQLKIEGSVLPQVIAMCVSCVDAHGLEVEG--IYRISGS 820


>SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2280

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 10/22 (45%), Positives = 17/22 (77%)
 Frame = -2

Query: 476  NTLFSSRIIRNNISGTIDSVDV 411
            NTLF  R+I +N+SG + +V++
Sbjct: 1473 NTLFPLRVIISNVSGFVVNVEI 1494


>SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase
           Vas1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 950

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 12/33 (36%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
 Frame = +1

Query: 184 WLLSVEVWWDHSKHYFWR--REDIAFACTNIEK 276
           W +S ++WW H +   W+   ED   A  N EK
Sbjct: 437 WCISRQIWWGH-QIPVWKILEEDKWIAAPNYEK 468


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,368,744
Number of Sequences: 5004
Number of extensions: 49309
Number of successful extensions: 103
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 103
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 246098644
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)