Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10d23f
         (576 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_8863| Best HMM Match : DAO (HMM E-Value=0.04)                       87   1e-17
SB_45985| Best HMM Match : IQ (HMM E-Value=1.7e-37)                    33   0.13 
SB_18656| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.3  

>SB_8863| Best HMM Match : DAO (HMM E-Value=0.04)
          Length = 485

 Score = 86.6 bits (205), Expect = 1e-17
 Identities = 54/118 (45%), Positives = 67/118 (56%)
 Frame = +3

Query: 213 SLEALFLAKRGHRVRLYEYREDIRNTPQARGRSINLALSIRGRTALREVGLEDHMINNHG 392
           +L A+F AKRG++V LYE R+D R       RSINLALS+RG +AL  VG E  M+ + G
Sbjct: 262 ALSAVFFAKRGYKVDLYESRQDPRKLQFVSLRSINLALSVRGISALAAVGCERPMVES-G 320

Query: 393 IPMKGRNIHRIDGSTYIIPYDSRTKQCIYSVGRNYLNGLLLQESEKYENVERFFNHKL 566
           IPM  R IH + GS Y IPY  +  Q I     N  N      +E + NV   F HKL
Sbjct: 321 IPMHARMIHTLKGSKYAIPY-GKKGQAI----SNLFNCYHYVVAESHPNVTLHFGHKL 373



 Score = 84.2 bits (199), Expect = 7e-17
 Identities = 47/106 (44%), Positives = 60/106 (56%)
 Frame = +3

Query: 144 MANLENGTFKKLDXXXXXXXXXXSLEALFLAKRGHRVRLYEYREDIRNTPQARGRSINLA 323
           MANL      + +          +L A+F AKRG++V LYE R+D R       RSINLA
Sbjct: 153 MANLSEDEKSRREVAIVGGGLVGALSAVFFAKRGYKVDLYESRQDPRKLQFVSLRSINLA 212

Query: 324 LSIRGRTALREVGLEDHMINNHGIPMKGRNIHRIDGSTYIIPYDSR 461
           LS+RG +AL  VG E  M+ + GIPM  R IH + GS Y IPY  +
Sbjct: 213 LSVRGISALAAVGCERPMVES-GIPMHARMIHTLKGSKYAIPYGKK 257


>SB_45985| Best HMM Match : IQ (HMM E-Value=1.7e-37)
          Length = 942

 Score = 33.5 bits (73), Expect = 0.13
 Identities = 15/36 (41%), Positives = 24/36 (66%), Gaps = 2/36 (5%)
 Frame = +3

Query: 240 RGHRVR--LYEYREDIRNTPQARGRSINLALSIRGR 341
           RGH+VR  L++ +EDI+   +ARG  +  A+ I+ R
Sbjct: 466 RGHQVRKDLHKLKEDIKREDRARGEKVKAAIKIQSR 501


>SB_18656| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3292

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = -1

Query: 306  YLGPVEYFLC-LLDIRTGERDVLSSPKIMLRVIPPNL 199
            YL P  Y+ C      +GE  VLSS K++ R +P ++
Sbjct: 1292 YLKPNSYYDCNTYTYFSGEPQVLSSLKVVFRTVPVDM 1328


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,300,970
Number of Sequences: 59808
Number of extensions: 361580
Number of successful extensions: 774
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 686
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 772
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1373676929
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)