Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10d23f
         (576 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    23   2.9  
DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    21   8.7  
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    21   8.7  

>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -2

Query: 452 IRNNISGTIDSVDVASFHGD 393
           IRN+   T++SV   + HGD
Sbjct: 239 IRNSTKDTLNSVVQGAIHGD 258


>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = -2

Query: 296 LWSISYVFSIFVQANAMSSLR 234
           +W +   FSI  QA A  SLR
Sbjct: 5   IWWLILYFSIVCQAKAHYSLR 25


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 5/13 (38%), Positives = 9/13 (69%)
 Frame = +2

Query: 407 TQHPPNRWFHLYY 445
           T+ PPN W  +++
Sbjct: 157 TRQPPNNWLSVFW 169


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 165,354
Number of Sequences: 438
Number of extensions: 3774
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16626408
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)