Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10d23f
         (576 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g01420.1 68418.m00055 glutaredoxin family protein                   28   3.9  
At1g11410.1 68414.m01311 S-locus protein kinase, putative simila...    27   6.8  
At5g23110.1 68418.m02703 zinc finger (C3HC4-type RING finger) fa...    27   9.0  
At3g14980.1 68416.m01894 PHD finger transcription factor, putati...    27   9.0  
At1g67660.1 68414.m07721 expressed protein                             27   9.0  

>At5g01420.1 68418.m00055 glutaredoxin family protein
          Length = 401

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 26/94 (27%), Positives = 42/94 (44%), Gaps = 7/94 (7%)
 Frame = +3

Query: 264 EYREDIRNTPQARGRSINLALSIRGRT---ALREVGLEDH---MINNHGIPMKG-RNIHR 422
           EYRE++R    A    +   L ++GR    A R +GL +     I   GIP+ G     R
Sbjct: 299 EYREELRRISAAETEVLPPVLFVKGRCIGGAQRVLGLHEQGKFKILFEGIPITGDERCRR 358

Query: 423 IDGSTYIIPYDSRTKQCIYSVGRNYLNGLLLQES 524
            DG  +++    R  + I S   + +  L+  E+
Sbjct: 359 CDGFRFLMCDGCRGSRRIISGDGSRIQCLICNEN 392


>At1g11410.1 68414.m01311 S-locus protein kinase, putative similar
           to receptor-like protein kinase [Arabidopsis thaliana]
           gi|4008008|gb|AAC95352; contains S-locus glycoprotein
           family domain, Pfam:PF00954
          Length = 840

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 13/51 (25%), Positives = 25/51 (49%)
 Frame = +3

Query: 336 GRTALREVGLEDHMINNHGIPMKGRNIHRIDGSTYIIPYDSRTKQCIYSVG 488
           G + LR VG+    ++   I       H I+ ++ +I + +R   C+Y+ G
Sbjct: 52  GNSKLRYVGIWYAQVSEQTIVWVANRDHPINDTSGLIKFSTRGNLCVYASG 102


>At5g23110.1 68418.m02703 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 4706

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = +2

Query: 386 SWDPHERTQHPPNRWFHLYY 445
           SW P     HP + WF L++
Sbjct: 665 SWHPESNRDHPSSSWFVLFW 684


>At3g14980.1 68416.m01894 PHD finger transcription factor, putative
           contains Pfam profile: PF00628 PHD-finger
          Length = 1189

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 12/20 (60%), Positives = 15/20 (75%)
 Frame = +1

Query: 112 YFCKILHTAQRWRI*RMERS 171
           Y CK+L TA RW+I + ERS
Sbjct: 246 YVCKVL-TAARWKIEKRERS 264


>At1g67660.1 68414.m07721 expressed protein
          Length = 355

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 18/53 (33%), Positives = 25/53 (47%)
 Frame = +3

Query: 219 EALFLAKRGHRVRLYEYREDIRNTPQARGRSINLALSIRGRTALREVGLEDHM 377
           EAL L K    V+ YE     + T  A  +S+NLA     +   RE+   DH+
Sbjct: 304 EALLLGKEDEEVKKYEPTSTHKRTKLAIAKSLNLA--AESKLVCREIA--DHV 352


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,027,299
Number of Sequences: 28952
Number of extensions: 248585
Number of successful extensions: 571
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 552
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 570
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1121903184
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)